C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BARX homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253968 BARX1-001 ENSG00000131668 9606 - 9:93951622-93955372 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverOvaryPlacentaTestisENST00000253968
Transcript ID Adrenal Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000253968 0.127±0.00 0.037±0.00 1.560±0.00 0.113±0.00 0.032±0.00 1.719±1.53 0.048±0.00 3.783±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QG CIL_0008QG_0001 VISTA 9:93400439-94002641
CIL_0008WO CIL_0008WO_0001 VISTA 9:93563376-94165036
CIL_0008XX CIL_0008XX_0001 VISTA 9:93838844-94440653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007267 IEA cell-cell signaling
GO:0009888 IEA tissue development
GO:0009952 IEA anterior/posterior pattern specification
GO:0030178 IEA negative regulation of Wnt signaling pathway
GO:0030855 IEA epithelial cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048513 IEA organ development
GO:0048536 IEA spleen development
GO:0048856 IEA anatomical structure development
GO:0055123 IEA digestive system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021813 Barx1-001 protein_coding Mus_musculus 0 1031

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