C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BarH-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021813 Barx1-001 ENSMUSG00000021381 10090 + 13:48662998-48666507 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000021813
Transcript ID Bladder Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000021813 0.008±0.00 0.111±0.06 0.029±0.01 0.069±0.01 0.507±0.28 0.075±0.03 0.073±0.03 1.653±1.05 0.104±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DD CIL_0009DD_0002 VISTA 13:48083545-48684932
CIL_0008XX CIL_0008XX_0002 VISTA 13:48265958-48867063
CIL_0008WO CIL_0008WO_0002 VISTA 13:48416450-49018010
CIL_0008QG CIL_0008QG_0002 VISTA 13:48479624-49081302
CIL_0000WB CIL_0000WB_0002 CGP 13:48577873-48666507
CIL_0000W6 CIL_0000W6_0002 CGP 13:48662998-48870885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007267 IGI cell-cell signaling
GO:0009888 IMP tissue development
GO:0009952 IMP anterior/posterior pattern specification
GO:0030178 IGI negative regulation of Wnt signaling pathway
GO:0030855 IMP epithelial cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048513 IMP organ development
GO:0048536 IMP spleen development
GO:0048856 IMP anatomical structure development
GO:0055123 IMP digestive system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253968 BARX1-001 protein_coding Homo_sapiens 0 1031
ENST00000401724 BARX1-002 protein_coding Homo_sapiens 0 612

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