C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254816 TRIM47-001 ENSG00000132481 9606 - 17:75874161-75878575 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverMuscleOvaryPlacentaENST00000254816
Transcript ID Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENST00000254816 0.679±0.00 0.880±0.00 1.714±0.00 0.620±0.00 2.014±0.00 1.146±0.00 5.352±0.00 1.128±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078U CIL_00078U_0001 CGP 17:75845699-75878575
CIL_00078V CIL_00078V_0001 CGP 17:75874161-75897003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021120 Trim47-002 protein_coding Mus_musculus 0 1855
ENSMUST00000106441 Trim47-001 protein_coding Mus_musculus 0 1840
ENSMUST00000141531 Trim47-003 processed_transcript Mus_musculus 0 1042

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