C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021120 Trim47-002 ENSMUSG00000020773 10090 - 11:116105752-116110246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021120 9.343±1.29 8.095±4.01 7.122±0.16 0.563±0.08 9.140±1.84 8.035±2.19 3.626±0.21 5.631±2.04 1.349±0.58 8.990±1.28 1.813±0.68 15.169±2.20 2.077±0.14 1.567±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_00078U CIL_00078U_0002 CGP 11:116078573-116127210
CIL_00078V CIL_00078V_0002 CGP 11:116105752-116131128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254816 TRIM47-001 protein_coding Homo_sapiens 0 1855
ENST00000585333 TRIM47-007 protein_coding Homo_sapiens 1e-29 134
ENST00000587339 TRIM47-002 protein_coding Homo_sapiens 0 1476
ENST00000587774 TRIM47-003 retained_intron Homo_sapiens 0 540
ENST00000592942 TRIM47-006 retained_intron Homo_sapiens 0 665

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