C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256474 VHL-001 ENSG00000134086 9606 + 3:10141008-10152220 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaENST00000256474
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000256474 0.944±0.00 1.429±0.00 1.375±0.00 0.926±0.00 1.395±0.00 0.502±0.00 1.916±1.36 0.827±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061Q CIL_00061Q_0001 CGP 3:10115592-10152220
CIL_00061P CIL_00061P_0001 CGP 3:10141008-10243743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000902 NAS cell morphogenesis
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005739 NAS mitochondrion
GO:0005783 NAS endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006508 TAS proteolysis
GO:0008134 IPI transcription factor binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0019899 IPI enzyme binding
GO:0043066 NAS negative regulation of apoptotic process
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045597 NAS positive regulation of cell differentiation
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0050821 NAS protein stabilization
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 IDA negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 IDA ubiquitin protein ligase activity
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035673 Vhl-001 protein_coding Mus_musculus 0 562

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