C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000254999-ENSG00000134086 CGP 9606 3:10115592-10152220
GeneTranscriptPositionBiotype
ENSG00000134086 (VHL)
von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase 		ENST00000256474 (VHL-001) 10141008-10152220 protein_coding
ENST00000345392 (VHL-002) 10141788-10152082 protein_coding
ENST00000477538 (VHL-003) 10142546-10150145 processed_transcript
ENSG00000254999 (BRK1)
BRICK1, SCAR/WAVE actin-nucleating complex subunit 		ENST00000530758 (BRK1-001) 10115592-10127190 protein_coding
CIL_00061Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033940-ENSMUSG00000033933 CGP 10090 6:113604772-113631633
GeneTranscriptPositionBiotype
ENSMUSG00000033933 (Vhl)
von Hippel-Lindau tumor suppressor 		ENSMUST00000035673 (Vhl-001) 113623959-113631633 protein_coding
ENSMUST00000128770 (Vhl-002) 113624721-113629761 processed_transcript
ENSMUST00000131819 (Vhl-003) 113624929-113629557 processed_transcript
ENSMUSG00000033940 (Brk1)
BRICK1, SCAR/WAVE actin-nucleating complex subunit 		ENSMUST00000035725 (Brk1-201) 113604772-113616948 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061Q_0001ENSG00000134086ENST00000256474ENST00000345392ENST00000477538ENSG00000254999ENST00000530758CIL_00061Q_0002ENSMUSG00000033933ENSMUST00000035673ENSMUST00000128770ENSMUST00000131819ENSMUSG00000033940ENSMUST00000035725
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061Q_0001ENSG00000134086ENST00000256474ENST00000345392ENST00000477538ENSG00000254999ENST00000530758CIL_00061Q_0002ENSMUSG00000033933ENSMUST00000035673ENSMUST00000128770ENSMUST00000131819ENSMUSG00000033940ENSMUST00000035725
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134086 ENST00000256474 N/A N/A N/A 0.944±0.00 1.429±0.00 1.375±0.00 N/A 0.926±0.00 1.395±0.00 0.502±0.00 N/A 1.916±1.36 0.827±0.00 N/A
ENST00000345392 8.450±0.00 12.538±0.00 1.866±0.00 3.534±0.79 3.984±1.57 1.876±0.52 1.458±0.87 4.874±0.00 2.020±1.04 3.367±1.21 1.193±0.92 3.540±1.18 4.161±2.07 7.019±0.82
ENST00000477538 N/A N/A 1.703±0.00 2.463±0.00 3.065±0.00 N/A N/A N/A 1.471±0.00 3.557±0.28 0.517±0.00 2.026±0.00 N/A N/A
ENSG00000254999 ENST00000530758 108.723±0.00 98.441±0.00 9.045±0.00 50.356±31.93 55.391±48.53 70.483±60.13 24.441±20.67 43.219±32.90 23.604±9.81 51.916±46.42 21.698±19.68 67.362±50.85 67.134±26.85 86.285±46.38
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033933 ENSMUST00000035673 11.659±0.66 18.281±2.14 7.002±0.27 12.049±6.44 10.254±4.38 7.780±1.05 2.865±0.42 7.723±0.31 4.250±0.45 9.642±0.29 1.747±0.72 12.803±5.32 11.673±6.45 15.192±9.25
ENSMUST00000128770 N/A N/A N/A 10.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.073±7.43
ENSMUST00000131819 N/A N/A N/A N/A 16.354±0.00 N/A N/A N/A 4.918±0.34 N/A N/A 14.578±0.00 21.530±0.00 61.247±1.70
ENSMUSG00000033940 ENSMUST00000035725 107.141±8.16 133.949±19.55 90.629±11.63 63.497±30.69 118.757±28.02 66.903±7.94 63.173±2.70 101.985±8.25 62.063±12.97 96.161±13.20 31.516±2.37 73.345±16.84 56.160±27.39 38.918±0.54

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