C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paroxysmal nonkinesigenic dyskinesia
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258362 PNKD-002 ENSG00000127838 9606 + 2:218323173-218346791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000258362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000258362 3.682±0.00 11.823±0.00 0.716±0.00 5.840±2.55 2.343±0.00 1.599±0.00 2.758±0.00 5.696±4.77 38.070±37.72 3.062±1.92 19.111±12.87 19.243±4.34 13.150±2.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VJ CIL_0005VJ_0001 CGP 2:218264123-218346793
CIL_0005VI CIL_0005VI_0001 CGP 2:218270392-218346793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004416 IEA hydroxyacylglutathione hydrolase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006750 IEA glutathione biosynthetic process
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087225 Pnkd-004 protein_coding Mus_musculus 0 1378
ENSMUST00000027370 Pnkd-001 protein_coding Mus_musculus 0 1242
ENSMUST00000087226 Pnkd-002 protein_coding Mus_musculus 0 1240
ENSMUST00000190398 Pnkd-008 retained_intron Mus_musculus 3e-17 95

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