C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA 3'-terminal phosphate cyclase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000348 Rtca-001 ENSMUSG00000000339 10090 - 3:116488963-116508208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000348 2.765±1.12 3.163±1.46 7.756±1.02 14.997±3.83 3.580±0.82 5.543±1.13 2.631±0.64 3.594±1.94 4.444±2.87 4.410±1.14 6.568±0.72 4.982±1.92 10.079±1.80 17.672±6.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ER CIL_0007ER_0002 CGP 3:116272553-116508208
CIL_0007ES CIL_0007ES_0002 CGP 3:116488963-116549976

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003963 IEA RNA-3'-phosphate cyclase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260563 RTCA-002 protein_coding Homo_sapiens 0 1026
ENST00000370128 RTCA-001 protein_coding Homo_sapiens 0 1184
ENST00000483474 RTCA-004 processed_transcript Homo_sapiens 0 372
ENST00000498617 RTCA-005 processed_transcript Homo_sapiens 0 401

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