C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fas associated factor family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261942 FAF2-001 ENSG00000113194 9606 + 5:176448355-176510074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261942 8.105±0.00 7.613±0.00 2.220±0.00 7.558±1.46 6.071±1.79 4.063±1.67 3.034±1.42 7.240±1.73 5.743±1.16 4.908±0.44 2.643±1.41 8.129±5.24 8.678±0.59 10.285±2.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002N7 CIL_0002N7_0001 CGP 5:176392455-176510074
CIL_0000OZ CIL_0000OZ_0002 CGP 5:176447628-176538025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005811 IDA lipid particle
GO:0006986 IEA response to unfolded protein
GO:0031625 IDA ubiquitin protein ligase binding
GO:0034098 IDA Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0034389 IMP lipid particle organization
GO:0035473 IDA lipase binding
GO:0043086 IDA negative regulation of catalytic activity
GO:0043130 IDA ubiquitin binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0055102 IDA lipase inhibitor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126071 Faf2-001 protein_coding Mus_musculus 0 1938
ENSMUST00000026991 Faf2-006 protein_coding Mus_musculus 0 1496
ENSMUST00000124752 Faf2-003 protein_coding Mus_musculus 0 717
ENSMUST00000135232 Faf2-004 protein_coding Mus_musculus 0 634
ENSMUST00000153894 Faf2-008 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000141915 Faf2-007 retained_intron Mus_musculus 0 392
ENSMUST00000135015 Faf2-002 nonsense_mediated_decay Mus_musculus 0 239
ENSMUST00000137413 Faf2-005 protein_coding Mus_musculus 8.40779e-45 187

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