C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma complex associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261965 TUBGCP3-001 ENSG00000126216 9606 - 13:112485005-112588167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261965 3.485±0.00 3.664±0.00 0.441±0.00 2.959±1.49 2.440±0.56 1.358±0.62 1.240±0.78 3.478±0.60 1.968±1.11 0.953±0.00 2.011±0.00 6.250±2.69 3.077±0.72 7.749±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014D CIL_00014D_0001 CGP 13:112376319-112588167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000922 IEA spindle pole
GO:0005198 NAS structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 NAS centrosome
GO:0005814 IDA centriole
GO:0005815 IEA microtubule organizing center
GO:0005819 NAS spindle
GO:0005827 IDA polar microtubule
GO:0005829 TAS cytosol
GO:0007020 NAS microtubule nucleation
GO:0007338 NAS single fertilization
GO:0016020 IDA membrane
GO:0043015 IDA gamma-tubulin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000776 Tubgcp3-001 protein_coding Mus_musculus 0 2883
ENSMUST00000167547 Tubgcp3-002 retained_intron Mus_musculus 0 1827
ENSMUST00000164774 Tubgcp3-003 nonsense_mediated_decay Mus_musculus 0 1733
ENSMUST00000164971 Tubgcp3-004 retained_intron Mus_musculus 0 1404
ENSMUST00000168657 Tubgcp3-010 retained_intron Mus_musculus 0 1061
ENSDART00000042064 tubgcp3-201 protein_coding Danio_rerio 0 937
ENSDART00000143228 tubgcp3-001 protein_coding Danio_rerio 0 937
ENSMUST00000164611 Tubgcp3-007 retained_intron Mus_musculus 0 558
ENSMUST00000164861 Tubgcp3-005 retained_intron Mus_musculus 0 379
ENSMUST00000165321 Tubgcp3-009 nonsense_mediated_decay Mus_musculus 0 363

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