C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RPGRIP1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262135 RPGRIP1L-003 ENSG00000103494 9606 - 16:53597683-53703889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverOvaryPlacentaENST00000262135
Transcript ID Brain Breast Colon Heart Liver Ovary Placenta
ENST00000262135 0.412±0.03 0.067±0.00 0.041±0.00 0.030±0.00 0.071±0.00 0.192±0.07 0.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OC CIL_0005OC_0001 CGP 16:53491040-53703938
CIL_0007SA CIL_0007SA_0001 VISTA 16:53595301-54195912
CIL_0005OE CIL_0005OE_0001 CGP 16:53597683-54121941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005911 IDA cell-cell junction
GO:0005923 IEA tight junction
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0031870 IPI thromboxane A2 receptor binding
GO:0036064 IDA ciliary basal body
GO:0045744 IDA negative regulation of G-protein coupled receptor protein signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047783 Rpgrip1l-001 protein_coding Mus_musculus 0 3415
ENSMUST00000139113 Rpgrip1l-002 nonsense_mediated_decay Mus_musculus 0 2017
ENSMUST00000136198 Rpgrip1l-004 retained_intron Mus_musculus 0 861
ENSMUST00000132757 Rpgrip1l-003 protein_coding Mus_musculus 0 342

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