C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAH (Asp-Glu-Ala-His) box polypeptide 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262415 DHX8-001 ENSG00000067596 9606 + 17:43483966-43525670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262415
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262415 0.476±0.00 1.443±0.13 2.172±0.00 1.970±0.00 0.735±0.38 1.206±0.18 1.444±0.07 3.054±2.19 3.441±1.91 4.549±1.48 4.931±2.37 2.941±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0001 VISTA 17:43262867-43863532
CIL_00090X CIL_00090X_0001 VISTA 17:43291368-43892559
CIL_000997 CIL_000997_0001 VISTA 17:43327654-43928719
CIL_00047L CIL_00047L_0001 CGP 17:43398959-43544463
CIL_000495 CIL_000495_0001 CGP 17:43483865-43579620

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005681 TAS spliceosomal complex
GO:0006200 IEA ATP catabolic process
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039152 Dhx8-001 protein_coding Mus_musculus 0 3975
ENSMUST00000129741 Dhx8-002 protein_coding Mus_musculus 0 3917
ENSMUST00000141461 Dhx8-004 retained_intron Mus_musculus 0 525

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