C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebral cavernous malformation 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262659 CCM2L-001 ENSG00000101331 9606 + 20:32010450-32032180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartMuscleOvaryPlacentaTestisENST00000262659
Transcript ID Bladder Brain Breast Colon Heart Muscle Ovary Placenta Testis
ENST00000262659 0.181±0.00 0.296±0.00 2.095±0.00 0.736±0.00 1.473±0.00 0.975±0.00 0.782±0.20 2.889±0.58 0.381±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0000C8 CIL_0000C8_0002 CGP 20:31968002-32032180
CIL_0004A2 CIL_0004A2_0001 CGP 20:32010450-32101856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003209 IEA cardiac atrium morphogenesis
GO:0003222 IEA ventricular trabecula myocardium morphogenesis
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0032091 IEA negative regulation of protein binding
GO:0034111 IEA negative regulation of homotypic cell-cell adhesion
GO:0042060 IEA wound healing
GO:0055017 IEA cardiac muscle tissue growth
GO:0090271 IEA positive regulation of fibroblast growth factor production

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109800 Ccm2l-002 protein_coding Mus_musculus 0 1783
ENSMUST00000127898 Ccm2l-001 processed_transcript Mus_musculus 0 1151
ENSMUST00000127549 Ccm2l-003 processed_transcript Mus_musculus 0 625
ENSMUST00000129377 Ccm2l-004 protein_coding Mus_musculus 0 536

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