C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: attractin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262919 ATRN-002 ENSG00000088812 9606 + 20:3471040-3651122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262919 3.249±0.00 1.970±0.00 3.855±0.00 11.013±0.09 3.590±0.30 2.159±0.31 2.830±1.34 9.109±1.80 4.392±1.15 3.131±0.62 2.350±0.00 4.173±0.66 3.788±0.56 4.822±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032V CIL_00032V_0001 CGP 20:3249305-3651122
CIL_00067S CIL_00067S_0002 CGP 20:3471040-3663399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005886 NAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006954 IEA inflammatory response
GO:0006979 IEA response to oxidative stress
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0021549 IEA cerebellum development
GO:0030246 IEA carbohydrate binding
GO:0040014 IEA regulation of multicellular organism growth
GO:0042552 IEA myelination
GO:0043473 IEA pigmentation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028781 Atrn-001 protein_coding Mus_musculus 0 5620
ENSMUST00000134964 Atrn-002 retained_intron Mus_musculus 0 4892
ENSMUST00000151364 Atrn-003 retained_intron Mus_musculus 0 470
ENSMUST00000132557 Atrn-005 retained_intron Mus_musculus 0 411
ENSMUST00000156982 Atrn-004 retained_intron Mus_musculus 0 340

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