C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptophysin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263233 SYP-001 ENSG00000102003 9606 - X:49187804-49200259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263233
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263233 0.372±0.00 0.383±0.00 145.854±23.00 0.458±0.06 4.613±3.95 0.976±0.00 1.076±0.98 0.331±0.00 1.104±0.72 0.081±0.00 0.706±0.52 0.716±0.47 0.978±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0006897 ISS endocytosis
GO:0008021 ISS synaptic vesicle
GO:0015485 IDA cholesterol binding
GO:0016020 IEA membrane
GO:0016188 NAS synaptic vesicle maturation
GO:0017075 IEA syntaxin-1 binding
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030285 NAS integral component of synaptic vesicle membrane
GO:0030672 IEA synaptic vesicle membrane
GO:0032403 IEA protein complex binding
GO:0042169 IEA SH2 domain binding
GO:0042734 IEA presynaptic membrane
GO:0042802 IEA identical protein binding
GO:0043005 ISS neuron projection
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0043621 TAS protein self-association
GO:0044306 IEA neuron projection terminus
GO:0045202 IEA synapse
GO:0048168 IBA regulation of neuronal synaptic plasticity
GO:0048169 ISS regulation of long-term neuronal synaptic plasticity
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048499 NAS synaptic vesicle membrane organization
GO:0048786 IEA presynaptic active zone
GO:0060076 IEA excitatory synapse
GO:0071310 IEA cellular response to organic substance
GO:2000474 ISS regulation of opioid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069520 Syp-001 protein_coding Mus_musculus 0 1657
ENSMUST00000149795 Syp-002 retained_intron Mus_musculus 0 887
ENSMUST00000128890 Syp-003 protein_coding Mus_musculus 0 512
ENSMUST00000150572 Syp-004 processed_transcript Mus_musculus 0 496
ENSMUST00000137515 Syp-005 retained_intron Mus_musculus 0 431
ENSMUST00000134355 Syp-006 retained_intron Mus_musculus 0 302

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