C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: epithelial cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263735 EPCAM-001 ENSG00000119888 9606 + 2:47369148-47387034 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000263735
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000263735 0.278±0.00 10.865±0.00 1.370±0.29 18.974±10.22 62.520±1.46 47.989±47.44 0.614±0.23 15.744±8.07 42.486±21.62 1.363±0.44 10.939±4.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0001 VISTA 2:46768636-47372293
CIL_0006KU CIL_0006KU_0001 CGP 2:47345158-47562311

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005923 IDA tight junction
GO:0008284 IDA positive regulation of cell proliferation
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016324 IDA apical plasma membrane
GO:0016328 IDA lateral plasma membrane
GO:0023019 IMP signal transduction involved in regulation of gene expression
GO:0032403 IDA protein complex binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IMP stem cell differentiation
GO:0070062 IDA extracellular vesicular exosome
GO:2000048 IDA negative regulation of cell-cell adhesion mediated by cadherin
GO:2000648 IMP positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053577 Epcam-201 protein_coding Mus_musculus 0 706

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