C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: epithelial cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053577 Epcam-201 ENSMUSG00000045394 10090 + 17:87635979-87651106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053577
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053577 13.333±13.27 0.040±0.02 16.998±3.39 0.635±0.39 34.858±10.11 289.114±148.93 0.493±0.11 34.972±3.57 0.673±0.78 21.322±5.27 0.077±0.07 28.024±6.31 36.539±18.31 4.192±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D2 CIL_0008D2_0002 VISTA 17:87075116-87678515
CIL_0006KU CIL_0006KU_0002 CGP 17:87635979-87723713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IEP ureteric bud development
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0005923 ISS tight junction
GO:0008284 ISS positive regulation of cell proliferation
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0016323 ISS basolateral plasma membrane
GO:0016324 ISS apical plasma membrane
GO:0016328 ISS lateral plasma membrane
GO:0023019 IEA signal transduction involved in regulation of gene expression
GO:0032403 IEA protein complex binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IEA stem cell differentiation
GO:0070062 IEA extracellular vesicular exosome
GO:2000048 IEA negative regulation of cell-cell adhesion mediated by cadherin
GO:2000648 IEA positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263735 EPCAM-001 protein_coding Homo_sapiens 0 706
ENST00000405271 EPCAM-002 protein_coding Homo_sapiens 0 658
ENST00000456133 EPCAM-003 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000490733 EPCAM-005 retained_intron Homo_sapiens 0 518
ENST00000511599 RP11-433O3.1-001 processed_pseudogene Homo_sapiens 0 226
ENST00000579991 DYNLL2-001 protein_coding Homo_sapiens 0.0004 53

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