C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: archain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264028 ARCN1-001 ENSG00000095139 9606 + 11:118572453-118602928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264028
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264028 22.862±0.00 6.499±0.00 2.804±0.00 8.546±1.63 6.740±2.01 8.129±3.23 5.964±3.38 12.301±5.16 9.477±1.44 10.926±0.32 6.609±3.30 21.237±6.64 22.059±1.74 20.401±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0001 VISTA 11:118137591-118740525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0008344 IEA adult locomotory behavior
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0021691 IEA cerebellar Purkinje cell layer maturation
GO:0030126 ISS COPI vesicle coat
GO:0030131 IEA clathrin adaptor complex
GO:0030137 IEA COPI-coated vesicle
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043473 IEA pigmentation
GO:0044822 IDA poly(A) RNA binding
GO:0048193 IEA Golgi vesicle transport
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034607 Arcn1-001 protein_coding Mus_musculus 0 2431
ENSMUST00000173278 Gm8750-001 processed_pseudogene Mus_musculus 0 1991
ENSMUST00000173427 Gm8752-001 processed_pseudogene Mus_musculus 0 1932
ENSMUST00000150160 Arcn1-002 retained_intron Mus_musculus 0 1234
ENSMUST00000125164 Arcn1-003 processed_transcript Mus_musculus 0 1000
ENSDART00000014666 arcn1a-001 protein_coding Danio_rerio 0 616

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