C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, gamma 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264144 LAMC2-001 ENSG00000058085 9606 + 1:183186288-183244900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264144
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264144 1.662±0.00 1.255±0.00 0.452±0.00 0.093±0.04 4.712±2.06 1.458±0.37 0.214±0.09 2.443±2.43 0.068±0.00 7.620±5.32 0.307±0.00 10.563±10.04 10.751±1.13 0.883±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W9 CIL_0001W9_0002 CGP 1:183023460-183244900
CIL_0001BK CIL_0001BK_0002 CGP 1:183186238-183418602

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005607 IEA laminin-2 complex
GO:0005610 IEA laminin-5 complex
GO:0005615 IEA extracellular space
GO:0005938 IEA cell cortex
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0008544 TAS epidermis development
GO:0016020 IEA membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027753 Lamc2-201 protein_coding Mus_musculus 0 3711
ENSMUST00000185356 Lamc2-001 protein_coding Mus_musculus 0 3711
ENSMUST00000188831 Lamc2-002 retained_intron Mus_musculus 0 385

Loading