C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkylglycerone phosphate synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264167 AGPS-001 ENSG00000018510 9606 + 2:177392644-177543836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264167 5.859±0.00 3.802±0.00 2.884±0.00 3.083±0.62 3.971±1.99 6.287±0.82 2.707±0.31 4.347±0.82 4.572±1.97 2.517±0.00 1.894±1.15 5.887±2.08 3.951±0.96 4.685±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00017P CIL_00017P_0001 CGP 2:177212563-177392697
CIL_00017Q CIL_00017Q_0001 CGP 2:177227595-177543836
CIL_00017H CIL_00017H_0001 CGP 2:177392644-177553014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005777 IDA peroxisome
GO:0005778 IDA peroxisomal membrane
GO:0005782 TAS peroxisomal matrix
GO:0008609 IDA alkylglycerone-phosphate synthase activity
GO:0008610 IDA lipid biosynthetic process
GO:0008611 ISS ether lipid biosynthetic process
GO:0008762 IEA UDP-N-acetylmuramate dehydrogenase activity
GO:0016020 IDA membrane
GO:0016491 IEA oxidoreductase activity
GO:0016614 IEA oxidoreductase activity, acting on CH-OH group of donors
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process
GO:0071949 ISS FAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047232 Agps-001 protein_coding Mus_musculus 0 3363
ENSMUST00000175646 Agps-007 protein_coding Mus_musculus 0 2348
ENSMUST00000111952 Agps-002 protein_coding Mus_musculus 0 1860
ENSMUST00000176973 Agps-006 nonsense_mediated_decay Mus_musculus 0 656
ENSMUST00000183142 Gm10292-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000176626 Agps-004 processed_transcript Mus_musculus 0 250
ENSMUST00000177204 Agps-005 retained_intron Mus_musculus 0 241
ENSMUST00000176056 Agps-003 protein_coding Mus_musculus 0 222

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