C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: deafness, autosomal recessive 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265134 DFNB31-001 ENSG00000095397 9606 - 9:114402080-114503173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000265134
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000265134 1.447±0.00 1.673±1.37 0.374±0.30 1.452±0.93 0.270±0.00 0.653±0.00 0.156±0.00 0.159±0.00 1.616±0.97 0.497±0.02 6.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C9 CIL_0002C9_0002 CGP 9:114334156-114505450
CIL_0004P9 CIL_0004P9_0001 CGP 9:114402080-114598373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IMP retina homeostasis
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0007605 IMP sensory perception of sound
GO:0032420 ISS stereocilium
GO:0050953 IMP sensory perception of light stimulus
GO:0060122 ISS inner ear receptor stereocilium organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124016 Whrn-011 processed_transcript Mus_musculus 0 2085
ENSMUST00000063650 Whrn-001 protein_coding Mus_musculus 0 2065
ENSMUST00000102867 Whrn-002 protein_coding Mus_musculus 0 2047
ENSMUST00000107393 Whrn-004 protein_coding Mus_musculus 0 2021
ENSMUST00000155058 Whrn-009 retained_intron Mus_musculus 0 1408
ENSMUST00000119294 Whrn-007 protein_coding Mus_musculus 0 1404
ENSMUST00000063672 Whrn-017 protein_coding Mus_musculus 0 1149
ENSMUST00000084510 Whrn-005 protein_coding Mus_musculus 0 1149
ENSMUST00000145133 Whrn-010 retained_intron Mus_musculus 0 492
ENSMUST00000095038 Whrn-006 protein_coding Mus_musculus 0 488
ENSMUST00000140720 Whrn-015 retained_intron Mus_musculus 0 418
ENSMUST00000133425 Whrn-014 protein_coding Mus_musculus 0 412
ENSMUST00000153307 Whrn-013 retained_intron Mus_musculus 0 263
ENSMUST00000144965 Whrn-016 protein_coding Mus_musculus 0 261
ENSMUST00000095037 Whrn-008 protein_coding Mus_musculus 0 220

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