C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 20517
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132397 Gm20517-001 ENSMUSG00000023984 10090 + 17:47611613-47683861 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalOvaryTestisENSMUST00000132397
Transcript ID Adrenal Ovary Testis
ENSMUST00000132397 4.063±0.31 4.228±0.08 17.958±2.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_0006L5 CIL_0006L5_0002 CGP 17:47599331-47624418
CIL_0006L6 CIL_0006L6_0002 CGP 17:47611589-47686738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0016592 IEA mediator complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265350 MED20-001 protein_coding Homo_sapiens 0 584
ENST00000373006 USP49-001 protein_coding Homo_sapiens 0 2423
ENST00000373009 USP49-201 protein_coding Homo_sapiens 0 2686
ENST00000373010 USP49-002 protein_coding Homo_sapiens 0 2145
ENST00000394251 MED20-004 protein_coding Homo_sapiens 0 562
ENST00000394253 USP49-007 protein_coding Homo_sapiens 0 2686
ENST00000409060 MED20-003 protein_coding Homo_sapiens 0 586
ENST00000409312 MED20-007 protein_coding Homo_sapiens 0 466
ENST00000423567 USP49-005 protein_coding Homo_sapiens 2e-19 100
ENST00000448078 USP49-004 nonsense_mediated_decay Homo_sapiens 0 619
ENST00000467535 MED20-002 processed_transcript Homo_sapiens 0 375
ENST00000482361 MED20-006 processed_transcript Homo_sapiens 0 372
ENST00000613074 MED20-201 protein_coding Homo_sapiens 0 569

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