C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cysteine and glycine-rich protein 3 (cardiac LIM protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265968 CSRP3-201 ENSG00000129170 9606 - 11:19182030-19202042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265968
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265968 0.019±0.00 0.102±0.00 7.281±0.00 0.167±0.00 298.443±200.73 0.036±0.00 0.360±0.34 0.295±0.23 120.071±100.22 0.068±0.05 3.078±0.00 4.638±4.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RI CIL_0008RI_0001 VISTA 11:18872537-19474989
CIL_0008YB CIL_0008YB_0001 VISTA 11:18916805-19520451
CIL_0007H7 CIL_0007H7_0002 CGP 11:19117099-19210573
CIL_0007HT CIL_0007HT_0002 CGP 11:19182030-19241620

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002026 ISS regulation of the force of heart contraction
GO:0003300 IMP cardiac muscle hypertrophy
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005856 IEA cytoskeleton
GO:0006874 ISS cellular calcium ion homeostasis
GO:0007519 TAS skeletal muscle tissue development
GO:0008270 IEA zinc ion binding
GO:0008307 IMP structural constituent of muscle
GO:0030018 IDA Z disc
GO:0031433 IDA telethonin binding
GO:0033365 IMP protein localization to organelle
GO:0035995 IMP detection of muscle stretch
GO:0042805 ISS actinin binding
GO:0048738 ISS cardiac muscle tissue development
GO:0055003 ISS cardiac myofibril assembly
GO:0060048 IMP cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032658 Csrp3-201 protein_coding Mus_musculus 0 845
ENSMUST00000167786 Csrp3-202 protein_coding Mus_musculus 0 815

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