C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2146 VISTA 9606 11:18916805-19520451
GeneTranscriptPositionBiotype
ENSG00000129170 (CSRP3)
cysteine and glycine-rich protein 3 (cardiac LIM protein) 		ENST00000265968 (CSRP3-201) 19182030-19202042 protein_coding
ENST00000533783 (CSRP3-002) 19182040-19210573 protein_coding
ENSG00000129173 (E2F8)
E2F transcription factor 8 		ENST00000250024 (E2F8-002) 19224535-19240951 protein_coding
ENST00000527884 (E2F8-001) 19224063-19241620 protein_coding
ENST00000529188 (E2F8-005) 19225520-19226078 processed_transcript
ENST00000532666 (E2F8-004) 19237347-19241598 protein_coding
ENST00000620009 (E2F8-201) 19224066-19241620 protein_coding
ENSG00000166833 (NAV2)
neuron navigator 2 		ENST00000349880 (NAV2-003) 19713366-20121598 protein_coding
ENST00000360655 (NAV2-008) 19350724-20121598 protein_coding
ENST00000396085 (NAV2-002) 19713335-20121598 protein_coding
ENST00000396087 (NAV2-001) 19713597-20118574 protein_coding
ENST00000525025 (NAV2-012) 20107245-20114680 retained_intron
ENST00000525322 (NAV2-006) 20022838-20080184 protein_coding
ENST00000526675 (NAV2-011) 20027554-20044995 processed_transcript
ENST00000527559 (NAV2-201) 19713335-20121598 protein_coding
ENST00000528008 (NAV2-014) 19931765-19933719 processed_transcript
ENST00000528923 (NAV2-013) 20114383-20118282 retained_intron
ENST00000530408 (NAV2-009) 20022845-20044991 protein_coding
ENST00000533746 (NAV2-004) 20104211-20118581 retained_intron
ENST00000533917 (NAV2-005) 20022556-20118603 protein_coding
ENST00000534229 (NAV2-007) 19777802-19880127 processed_transcript
ENST00000534299 (NAV2-010) 20027255-20044991 processed_transcript
ENST00000540292 (NAV2-202) 19713335-20121598 protein_coding
ENSG00000177054 (ZDHHC13)
zinc finger, DHHC-type containing 13 		ENST00000399351 (ZDHHC13-002) 19117145-19176415 protein_coding
ENST00000446113 (ZDHHC13-001) 19117129-19176415 protein_coding
ENST00000524744 (ZDHHC13-006) 19117184-19118817 processed_transcript
ENST00000525490 (ZDHHC13-003) 19117156-19176422 retained_intron
ENST00000530100 (ZDHHC13-005) 19164282-19166716 retained_intron
ENST00000530698 (ZDHHC13-008) 19148670-19152625 processed_transcript
ENST00000532026 (ZDHHC13-009) 19117099-19149255 processed_transcript
ENST00000532812 (ZDHHC13-007) 19148614-19155931 processed_transcript
ENSG00000183695 (MRGPRX2)
MAS-related GPR, member X2 		ENST00000329773 (MRGPRX2-001) 19054455-19060681 protein_coding
ENSG00000254544 (PCNAP4)
proliferating cell nuclear antigen pseudogene 4 		ENST00000532690 (PCNAP4-001) 19274540-19275269 processed_pseudogene
ENSG00000254622 (NAV2-AS4)
NAV2 antisense RNA 4 		ENST00000532874 (NAV2-AS4-001) 19510890-19519896 antisense
ENSG00000254720 (RP11-583F24.3)
 ENST00000527463 (RP11-583F24.3-001) 18971746-18972703 unprocessed_pseudogene
ENSG00000255043 (NAV2-AS5)
NAV2 antisense RNA 5 		ENST00000528726 (NAV2-AS5-001) 19502672-19507229 antisense
ENST00000530652 (NAV2-AS5-002) 19504891-19505900 antisense
ENSG00000255160 (RP11-428C19.5)
 ENST00000528326 (RP11-428C19.5-001) 19299883-19308358 lincRNA
ENST00000529082 (RP11-428C19.5-002) 19300002-19308358 lincRNA
ENSG00000255244 (RP11-583F24.8)
 ENST00000528646 (RP11-583F24.8-001) 18934985-18939721 antisense
ENSG00000255270 (NAV2-IT1)
NAV2 intronic transcript 1 (non-protein coding) 		ENST00000528204 (NAV2-IT1-001) 19380484-19385014 sense_intronic
ENSG00000255308 (RP11-428C19.4)
 ENST00000527978 (RP11-428C19.4-001) 19196775-19281426 antisense
ENSG00000255424 (RP11-589F4.2)
 ENST00000532323 (RP11-589F4.2-001) 19029697-19030438 unprocessed_pseudogene
CIL_0008YB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2146 VISTA 10090 7:48559718-49163012
GeneTranscriptPositionBiotype
ENSMUSG00000030470 (Csrp3)
cysteine and glycine-rich protein 3 		ENSMUST00000032658 (Csrp3-201) 48830398-48848051 protein_coding
ENSMUST00000167786 (Csrp3-202) 48830398-48843671 protein_coding
ENSMUSG00000030471 (Zdhhc13)
zinc finger, DHHC domain containing 13 		ENSMUST00000118927 (Zdhhc13-001) 48789003-48827440 protein_coding
ENSMUST00000125280 (Zdhhc13-002) 48789026-48824717 protein_coding
ENSMUST00000139125 (Zdhhc13-003) 48789032-48802921 processed_transcript
ENSMUSG00000046179 (E2f8)
E2F transcription factor 8 		ENSMUST00000058745 (E2f8-002) 48866429-48881041 protein_coding
ENSMUST00000119223 (E2f8-001) 48866429-48881596 protein_coding
ENSMUST00000136142 (E2f8-003) 48878833-48881004 retained_intron
ENSMUST00000151139 (E2f8-004) 48872107-48875251 retained_intron
ENSMUSG00000070546 (Mrgprb3)
MAS-related GPR, member B3 		ENSMUST00000094383 (Mrgprb3-001) 48642803-48643811 protein_coding
ENSMUSG00000085995 (Gm2788)
predicted gene 2788 		ENSMUST00000129551 (Gm2788-002) 48877958-48885961 processed_transcript
ENSMUST00000147173 (Gm2788-001) 48881300-48886608 processed_transcript
ENSMUSG00000099889 (RP24-444C13.26)
predicted gene 7262 		ENSMUST00000187816 (RP24-444C13.26-001) 48684621-48685614 unprocessed_pseudogene
ENSMUSG00000100250 (RP24-444C13.25)
predicted gene, 18353 		ENSMUST00000185906 (RP24-444C13.25-001) 48609549-48610332 unprocessed_pseudogene
ENSMUSG00000101362 (Mrgprb9-ps)
MAS-related GPR, member B9, pseudogene 		ENSMUST00000188739 (Mrgprb9-ps-001) 48590802-48591693 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YB_0001ENSG00000129170ENST00000265968ENST00000533783ENSG00000129173ENST00000250024ENST00000527884ENST00000529188ENST00000532666ENST00000620009ENSG00000166833ENST00000349880ENST00000360655ENST00000396085ENST00000396087ENST00000525025ENST00000525322ENST00000526675ENST00000527559ENST00000528008ENST00000528923ENST00000530408ENST00000533746ENST00000533917ENST00000534229ENST00000534299ENST00000540292ENSG00000177054ENST00000399351ENST00000446113ENST00000524744ENST00000525490ENST00000530100ENST00000530698ENST00000532026ENST00000532812ENSG00000183695ENST00000329773ENSG00000254544ENST00000532690ENSG00000254622ENST00000532874ENSG00000254720ENST00000527463ENSG00000255043ENST00000528726ENST00000530652ENSG00000255160ENST00000528326ENST00000529082ENSG00000255244ENST00000528646ENSG00000255270ENST00000528204ENSG00000255308ENST00000527978ENSG00000255424ENST00000532323CIL_0008YB_0002ENSMUSG00000030470ENSMUST00000032658ENSMUST00000167786ENSMUSG00000030471ENSMUST00000118927ENSMUST00000125280ENSMUST00000139125ENSMUSG00000046179ENSMUST00000058745ENSMUST00000119223ENSMUST00000136142ENSMUST00000151139ENSMUSG00000070546ENSMUST00000094383ENSMUSG00000085995ENSMUST00000129551ENSMUST00000147173ENSMUSG00000099889ENSMUST00000187816ENSMUSG00000100250ENSMUST00000185906ENSMUSG00000101362ENSMUST00000188739
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YB_0001ENSG00000129170ENST00000265968ENST00000533783ENSG00000129173ENST00000250024ENST00000527884ENST00000532666ENST00000620009ENSG00000166833ENST00000349880ENST00000360655ENST00000396085ENST00000396087ENST00000525322ENST00000527559ENST00000533917ENST00000534229ENSG00000177054ENST00000399351ENST00000446113ENST00000525490ENST00000530100ENST00000532812ENSG00000183695ENST00000329773ENSG00000254544ENST00000532690ENSG00000254622ENST00000532874ENSG00000254720ENST00000527463ENSG00000255043ENST00000528726ENST00000530652ENSG00000255160ENST00000528326ENST00000529082ENSG00000255244ENST00000528646ENSG00000255270ENST00000528204ENSG00000255308ENST00000527978ENSG00000255424ENST00000532323CIL_0008YB_0002ENSMUSG00000030470ENSMUST00000032658ENSMUST00000167786ENSMUSG00000030471ENSMUST00000118927ENSMUST00000125280ENSMUST00000139125ENSMUSG00000046179ENSMUST00000058745ENSMUST00000119223ENSMUST00000136142ENSMUST00000151139ENSMUSG00000070546ENSMUST00000094383ENSMUSG00000085995ENSMUST00000129551ENSMUST00000147173ENSMUSG00000099889ENSMUST00000187816ENSMUSG00000100250ENSMUST00000185906ENSMUSG00000101362ENSMUST00000188739
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129170 ENST00000265968 N/A 0.019±0.00 N/A 0.102±0.00 7.281±0.00 0.167±0.00 298.443±200.73 0.036±0.00 0.360±0.34 0.295±0.23 120.071±100.22 0.068±0.05 3.078±0.00 4.638±4.62
ENST00000533783 N/A N/A N/A 0.047±0.00 N/A 0.033±0.00 N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000129173 ENST00000250024 0.105±0.00 N/A N/A N/A 0.046±0.00 N/A 0.197±0.04 0.161±0.00 0.013±0.00 0.105±0.00 0.889±0.26 0.352±0.37 0.171±0.09 0.189±0.00
ENST00000527884 N/A 0.094±0.00 N/A 0.006±0.00 0.069±0.00 0.116±0.00 0.248±0.00 0.013±0.00 N/A 0.027±0.00 N/A 0.526±0.44 0.308±0.05 0.389±0.04
ENST00000529188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532666 N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.18 N/A N/A 0.852±0.00 N/A 0.695±0.00
ENST00000620009 0.055±0.00 N/A N/A 0.006±0.00 0.062±0.00 N/A N/A 0.012±0.00 N/A 0.028±0.00 N/A N/A N/A N/A
ENSG00000166833 ENST00000349880 N/A 0.513±0.00 N/A N/A 0.612±0.00 N/A N/A N/A 0.490±0.00 0.706±0.00 N/A N/A N/A N/A
ENST00000360655 N/A 0.633±0.00 0.455±0.00 N/A N/A 1.113±0.00 N/A 0.584±0.00 N/A N/A N/A N/A 0.874±0.00 0.235±0.00
ENST00000396085 0.456±0.00 N/A N/A N/A N/A 0.518±0.00 0.444±0.19 N/A N/A 1.333±0.00 N/A 0.614±0.00 0.906±0.02 0.293±0.00
ENST00000396087 1.022±0.00 N/A N/A N/A N/A N/A 0.930±0.00 N/A N/A N/A 0.184±0.00 N/A N/A N/A
ENST00000525025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525322 N/A N/A 1.887±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A
ENST00000526675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527559 N/A 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533917 N/A N/A N/A N/A 1.131±0.00 N/A N/A N/A 1.045±0.00 N/A N/A 0.642±0.00 2.141±0.00 N/A
ENST00000534229 N/A N/A N/A N/A N/A 5.928±0.00 N/A N/A N/A N/A 1.958±0.00 N/A N/A N/A
ENST00000534299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000177054 ENST00000399351 0.941±0.00 0.787±0.00 N/A 0.695±0.08 0.987±0.24 N/A N/A 1.759±0.00 0.319±0.00 N/A 0.365±0.00 1.371±0.58 0.694±0.01 1.145±0.00
ENST00000446113 0.681±0.00 1.728±0.00 N/A 2.013±1.08 N/A 2.494±0.00 0.194±0.00 2.007±0.00 N/A 1.047±0.00 N/A 4.075±2.32 1.956±0.51 5.492±1.83
ENST00000524744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525490 N/A N/A 0.169±0.00 N/A 0.604±0.00 N/A 0.062±0.00 0.058±0.00 0.216±0.00 N/A 0.111±0.00 N/A N/A N/A
ENST00000530100 N/A N/A 0.666±0.00 N/A N/A N/A N/A 0.228±0.00 N/A N/A 0.671±0.00 N/A N/A N/A
ENST00000530698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.392±0.00 N/A N/A N/A
ENSG00000183695 ENST00000329773 N/A 0.013±0.00 N/A N/A N/A N/A 0.006±0.00 N/A 0.746±0.00 N/A N/A 0.070±0.00 N/A 0.084±0.03
ENSG00000254544 ENST00000532690 N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254622 ENST00000532874 0.025±0.00 N/A 0.386±0.00 0.098±0.00 0.039±0.00 N/A N/A 0.162±0.06 0.284±0.00 0.307±0.00 0.572±0.00 0.375±0.00 0.360±0.25 0.072±0.03
ENSG00000254720 ENST00000527463 N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A 0.095±0.00
ENSG00000255043 ENST00000528726 N/A 0.048±0.00 0.069±0.00 0.035±0.02 0.052±0.03 N/A 0.013±0.00 0.329±0.27 N/A N/A N/A 0.130±0.00 0.039±0.00 0.184±0.11
ENST00000530652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.03
ENSG00000255160 ENST00000528326 N/A 0.261±0.00 N/A N/A N/A N/A 0.128±0.00 N/A N/A 0.326±0.00 N/A N/A N/A N/A
ENST00000529082 N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A N/A 1.180±0.80 N/A 0.085±0.02 N/A 0.087±0.00
ENSG00000255244 ENST00000528646 0.057±0.00 N/A N/A 0.041±0.00 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.221±0.00
ENSG00000255270 ENST00000528204 0.026±0.00 0.082±0.00 N/A 0.109±0.08 N/A 1.240±0.00 0.285±0.26 3.155±0.00 0.929±0.00 1.040±0.00 N/A N/A N/A N/A
ENSG00000255308 ENST00000527978 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.00 N/A 0.122±0.00 N/A N/A
ENSG00000255424 ENST00000532323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030470 ENSMUST00000032658 N/A N/A 0.010±0.00 0.067±0.00 3.184±3.00 N/A 302.547±59.06 1.342±1.05 0.614±0.81 12.093±6.81 43.662±12.28 0.151±0.00 0.376±0.32 0.120±0.05
ENSMUST00000167786 N/A N/A N/A N/A N/A N/A N/A N/A 5.028±2.30 N/A N/A N/A N/A N/A
ENSMUSG00000030471 ENSMUST00000118927 2.708±1.27 1.839±0.56 15.425±6.65 7.013±2.88 2.200±0.88 5.508±2.03 1.716±0.59 2.128±0.88 3.547±2.78 2.111±0.70 1.245±0.33 2.592±1.88 20.858±5.67 2.046±0.54
ENSMUST00000125280 3.377±0.68 0.970±0.43 2.779±0.00 5.024±2.20 2.864±1.05 12.141±6.58 1.789±0.62 1.861±0.52 1.757±0.93 3.217±1.08 0.445±0.11 9.013±2.88 8.071±0.00 2.742±1.40
ENSMUST00000139125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.047±0.00 80.629±1.81 N/A
ENSMUSG00000046179 ENSMUST00000058745 0.723±0.08 N/A 0.092±0.01 1.189±0.18 0.180±0.11 1.120±0.36 0.048±0.00 0.106±0.01 9.652±6.82 0.155±0.00 0.063±0.00 0.775±0.30 14.533±10.16 0.683±0.00
ENSMUST00000119223 0.192±0.14 0.124±0.03 0.119±0.06 0.461±0.32 0.172±0.08 1.083±0.14 0.133±0.02 0.065±0.01 4.477±2.80 0.142±0.05 0.033±0.02 0.989±0.70 19.709±18.90 1.801±0.50
ENSMUST00000136142 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.214±0.00 N/A N/A N/A
ENSMUSG00000070546 ENSMUST00000094383 0.057±0.00 N/A 0.032±0.00 N/A 0.192±0.06 N/A 0.028±0.00 N/A 0.043±0.03 N/A 0.047±0.00 N/A 0.026±0.01 0.077±0.07
ENSMUSG00000085995 ENSMUST00000129551 N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 32.643±9.43 N/A N/A N/A N/A N/A
ENSMUST00000147173 N/A N/A N/A N/A N/A N/A N/A N/A 6.289±1.86 N/A 0.028±0.00 N/A N/A 2.475±0.17
ENSMUSG00000099889 ENSMUST00000187816 N/A 0.547±0.25 0.028±0.02 N/A 0.770±0.19 0.166±0.11 0.153±0.09 N/A 1.466±1.62 0.084±0.04 0.050±0.00 0.269±0.00 0.007±0.00 0.626±0.34
ENSMUSG00000100250 ENSMUST00000185906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00
ENSMUSG00000101362 ENSMUST00000188739 N/A N/A 0.047±0.03 N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A 0.101±0.07

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