C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thioredoxin-like 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268483 TXNL4B-001 ENSG00000140830 9606 - 16:72084853-72093651 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268483
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268483 7.343±0.00 1.262±0.00 4.311±1.97 2.463±0.00 4.145±0.00 2.904±0.00 3.774±0.75 3.015±0.00 2.925±0.00 1.721±0.00 3.330±1.12 2.778±0.71 9.755±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098E CIL_00098E_0001 VISTA 16:71920667-72521926
CIL_00098B CIL_00098B_0001 VISTA 16:71941307-72542883
CIL_0002Q2 CIL_0002Q2_0001 CGP 16:72044289-72094431

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0007067 IEA mitotic nuclear division
GO:0008380 IEA RNA splicing
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178445 Txnl4b-201 protein_coding Mus_musculus 0 555
ENSMUST00000034159 Txnl4b-001 protein_coding Mus_musculus 0 555
ENSDART00000109083 txnl4b-002 protein_coding Danio_rerio 0 281
ENSDART00000081945 txnl4b-001 protein_coding Danio_rerio 0 281
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.0002 53

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