C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thioredoxin-like 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034159 Txnl4b-001 ENSMUSG00000031723 10090 + 8:109565892-109574051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034159
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034159 4.809±0.56 2.792±0.69 2.160±0.69 3.109±1.56 3.276±0.68 1.902±0.52 1.978±0.42 3.873±0.44 3.003±1.09 3.084±0.46 3.566±0.66 3.125±0.76 2.619±0.90 18.528±6.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FG CIL_0008FG_0002 VISTA 8:109010589-109613918
CIL_00098B CIL_00098B_0002 VISTA 8:109116597-109718209
CIL_00098E CIL_00098E_0002 VISTA 8:109136455-109737561
CIL_0002Q2 CIL_0002Q2_0002 CGP 8:109565892-109579172

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0003674 ND molecular_function
GO:0005634 ISO nucleus
GO:0005681 IEA spliceosomal complex
GO:0007067 IEA mitotic nuclear division
GO:0008284 ISO positive regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268483 TXNL4B-001 protein_coding Homo_sapiens 0 555
ENST00000423037 TXNL4B-201 protein_coding Homo_sapiens 0 555
ENST00000426362 TXNL4B-003 protein_coding Homo_sapiens 0 555
ENST00000562153 TXNL4B-002 protein_coding Homo_sapiens 0 327
ENST00000565171 TXNL4B-004 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000569767 TXNL4B-005 protein_coding Homo_sapiens 0 327

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