C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rcd1 (required for cell differentiation) homolog 1 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087215 Rqcd1-001 ENSMUSG00000026174 10090 + 1:74506058-74530842 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087215
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087215 12.796±4.27 9.780±0.83 10.853±1.30 21.374±2.37 9.516±2.38 4.891±0.80 10.818±0.90 13.945±8.11 9.338±0.64 4.992±0.32 15.672±6.81 18.058±7.15 14.750±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000651 CIL_000651_0002 CGP 1:74409376-74544284
CIL_00064Y CIL_00064Y_0002 CGP 1:74435511-74544284
CIL_00066C CIL_00066C_0002 CGP 1:74506058-74567794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0016020 IEA membrane
GO:0019221 IDA cytokine-mediated signaling pathway
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0033147 ISS negative regulation of intracellular estrogen receptor signaling pathway
GO:2000327 ISS positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273064 RQCD1-001 protein_coding Homo_sapiens 0 1984
ENST00000295701 RQCD1-002 protein_coding Homo_sapiens 0 1042
ENST00000418808 RQCD1-007 protein_coding Homo_sapiens 0 719
ENST00000432877 RQCD1-004 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000542068 RQCD1-201 protein_coding Homo_sapiens 0 1984

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