C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273411 RPL39P5-002 ENSG00000214289 9606 - 3:134351852-134356561 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115231 Rpl39-001 protein_coding Mus_musculus 0 207
ENSMUST00000121292 Rpl39l-002 protein_coding Mus_musculus 0 206
ENSMUST00000044103 Rpl39l-001 protein_coding Mus_musculus 0 206
ENSMUST00000142604 Rpl39-ps-002 processed_transcript Mus_musculus 0 202
ENSMUST00000117602 Gm15148-001 processed_pseudogene Mus_musculus 8.40779e-45 183
ENSMUST00000121971 Gm12013-001 processed_pseudogene Mus_musculus 2.94273e-44 182
ENSMUST00000146505 Rpl39-ps-001 transcribed_processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000118985 Gm14541-001 processed_pseudogene Mus_musculus 3.9937e-43 178
ENSMUST00000191066 RP23-127L14.1-001 processed_pseudogene Mus_musculus 1.99965e-42 176
ENSMUST00000119534 Gm15067-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000121969 Gm11334-001 processed_pseudogene Mus_musculus 4e-38 161
ENSMUST00000118637 Gm11694-001 processed_pseudogene Mus_musculus 6e-37 158
ENSMUST00000138799 Rpl39-002 retained_intron Mus_musculus 2e-36 156
ENSMUST00000138224 Amotl2-005 retained_intron Mus_musculus 6e-17 92
ENSMUST00000130602 Amotl2-004 protein_coding Mus_musculus 6e-17 92
ENSMUST00000142011 Amotl2-003 nonsense_mediated_decay Mus_musculus 6e-17 92
ENSMUST00000035121 Amotl2-001 protein_coding Mus_musculus 6e-17 92
ENSMUST00000153965 Amotl2-002 protein_coding Mus_musculus 6e-17 92

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