C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142604 Rpl39-ps-002 ENSMUSG00000036305 10090 + 15:102634982-102635336 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000142604
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000142604 10.803±1.16 10.726±0.60 4.800±3.13 4.301±2.25 1.274±0.63 2.734±1.70 2.034±0.57 28.110±23.73 1.957±0.51 2.835±0.54 3.023±1.48 1.472±1.26 0.445±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_00061S CIL_00061S_0002 CGP 15:102525946-102672352

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273411 RPL39P5-002 processed_transcript Homo_sapiens 0 202
ENST00000296277 RPL39L-002 protein_coding Homo_sapiens 0 191
ENST00000361575 RPL39-001 protein_coding Homo_sapiens 0 244
ENST00000409627 SUMO1-006 nonsense_mediated_decay Homo_sapiens 0.000000006 66
ENST00000416137 RP3-522D1.2-001 processed_pseudogene Homo_sapiens 3e-40 167
ENST00000422215 RP11-307O1.1-001 processed_pseudogene Homo_sapiens 9.94922e-44 178
ENST00000423619 RP11-54O7.10-001 processed_pseudogene Homo_sapiens 2.8026e-45 183
ENST00000424573 RPL39P3-001 processed_pseudogene Homo_sapiens 0 200
ENST00000426171 RP11-415H23.4-001 processed_pseudogene Homo_sapiens 6e-32 139
ENST00000433055 RPL39L-003 protein_coding Homo_sapiens 0 191
ENST00000439897 RP11-91I11.1-001 processed_pseudogene Homo_sapiens 1.99965e-42 174
ENST00000441819 AC069257.6-001 processed_pseudogene Homo_sapiens 2e-31 137
ENST00000443146 AC004920.2-001 processed_pseudogene Homo_sapiens 5e-38 159
ENST00000447385 AC020550.7-001 processed_pseudogene Homo_sapiens 1.99993e-41 171
ENST00000447779 RPL39P29-001 processed_pseudogene Homo_sapiens 1e-23 111
ENST00000449384 RPL39P25-001 processed_pseudogene Homo_sapiens 1e-38 161
ENST00000453523 AC079354.6-001 processed_pseudogene Homo_sapiens 6.00036e-42 172
ENST00000455270 RPL39L-001 protein_coding Homo_sapiens 0 191
ENST00000455840 RP3-481F12.1-001 processed_pseudogene Homo_sapiens 1e-28 128
ENST00000459631 CTD-3141N22.1-001 transcribed_processed_pseudogene Homo_sapiens 3e-35 150
ENST00000465012 RP11-178L8.1-001 processed_pseudogene Homo_sapiens 0 187
ENST00000467003 ZNF525-001 protein_coding Homo_sapiens 1.99993e-41 176
ENST00000468844 RPL39-002 processed_transcript Homo_sapiens 0 204
ENST00000475179 ZNF525-003 protein_coding Homo_sapiens 6.99949e-42 176
ENST00000480211 RP11-318G8.1-001 processed_pseudogene Homo_sapiens 9.94922e-44 178
ENST00000490784 RPL39P36-001 processed_pseudogene Homo_sapiens 6e-37 156
ENST00000495111 RP11-1094M14.1-001 processed_pseudogene Homo_sapiens 3e-40 167
ENST00000512505 RPL39P5-001 transcribed_processed_pseudogene Homo_sapiens 4.06377e-44 180
ENST00000543629 LMNTD1-011 protein_coding Homo_sapiens 8e-32 141
ENST00000624073 ZNF525-201 protein_coding Homo_sapiens 1e-38 161

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