C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044103 Rpl39l-001 ENSMUSG00000039209 10090 + 16:10170228-10174911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044103
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044103 0.218±0.15 0.205±0.06 0.646±0.12 1.409±0.75 0.171±0.11 0.058±0.00 0.566±0.40 0.374±0.15 0.054±0.00 0.376±0.21 0.941±0.76 143.741±71.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007XM CIL_0007XM_0002 VISTA 16:9751117-10351975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005575 ND cellular_component
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273411 RPL39P5-002 processed_transcript Homo_sapiens 0 206
ENST00000296277 RPL39L-002 protein_coding Homo_sapiens 0 206
ENST00000361575 RPL39-001 protein_coding Homo_sapiens 0 228
ENST00000416137 RP3-522D1.2-001 processed_pseudogene Homo_sapiens 0 206
ENST00000422215 RP11-307O1.1-001 processed_pseudogene Homo_sapiens 0 217
ENST00000423619 RP11-54O7.10-001 processed_pseudogene Homo_sapiens 4.06377e-44 180
ENST00000424573 RPL39P3-001 processed_pseudogene Homo_sapiens 0 217
ENST00000426171 RP11-415H23.4-001 processed_pseudogene Homo_sapiens 3e-40 167
ENST00000433055 RPL39L-003 protein_coding Homo_sapiens 0 206
ENST00000439897 RP11-91I11.1-001 processed_pseudogene Homo_sapiens 8.00001e-41 169
ENST00000441819 AC069257.6-001 processed_pseudogene Homo_sapiens 1e-29 132
ENST00000443146 AC004920.2-001 processed_pseudogene Homo_sapiens 0 191
ENST00000446011 AC016700.6-001 processed_pseudogene Homo_sapiens 0 206
ENST00000447385 AC020550.7-001 processed_pseudogene Homo_sapiens 9.94922e-44 178
ENST00000447779 RPL39P29-001 processed_pseudogene Homo_sapiens 3e-30 134
ENST00000449384 RPL39P25-001 processed_pseudogene Homo_sapiens 0 187
ENST00000453523 AC079354.6-001 processed_pseudogene Homo_sapiens 4.06377e-44 180
ENST00000455270 RPL39L-001 protein_coding Homo_sapiens 0 206
ENST00000455840 RP3-481F12.1-001 processed_pseudogene Homo_sapiens 8e-31 135
ENST00000459631 CTD-3141N22.1-001 transcribed_processed_pseudogene Homo_sapiens 9.80909e-45 182
ENST00000460281 CTC-512J14.1-001 processed_pseudogene Homo_sapiens 0 195
ENST00000465012 RP11-178L8.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000467003 ZNF525-001 protein_coding Homo_sapiens 2.8026e-45 189
ENST00000467018 RPL39P38-001 processed_pseudogene Homo_sapiens 1.99965e-42 174
ENST00000468844 RPL39-002 processed_transcript Homo_sapiens 0 228
ENST00000475179 ZNF525-003 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000480211 RP11-318G8.1-001 processed_pseudogene Homo_sapiens 9.80909e-45 182
ENST00000490784 RPL39P36-001 processed_pseudogene Homo_sapiens 5.00264e-43 176
ENST00000495111 RP11-1094M14.1-001 processed_pseudogene Homo_sapiens 0 200
ENST00000512505 RPL39P5-001 transcribed_processed_pseudogene Homo_sapiens 0 195
ENST00000543629 LMNTD1-011 protein_coding Homo_sapiens 8e-37 158
ENST00000624073 ZNF525-201 protein_coding Homo_sapiens 0 189

Loading