C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000277746 NRBF2-001 ENSG00000148572 9606 + 10:63133290-63155026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000277746
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000277746 6.527±0.00 1.817±0.00 6.607±0.00 3.529±2.57 3.685±0.00 2.302±0.00 5.044±0.00 5.211±4.77 3.282±2.59 6.186±0.00 4.313±1.83 7.027±1.93 4.000±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q4 CIL_0004Q4_0002 CGP 10:62811996-63155031
CIL_0007NX CIL_0007NX_0001 UCNEbase 10:63000173-63167486
CIL_0000H2 CIL_0000H2_0002 CGP 10:63133247-63465881

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077839 Nrbf2-001 protein_coding Mus_musculus 0 1454
ENSMUST00000100617 Gm6740-201 processed_pseudogene Mus_musculus 0 867
ENSMUST00000100598 Gm6755-201 processed_pseudogene Mus_musculus 0 867

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