C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007NX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
EGR2 UCNEbase 9606 10:63000173-63167486
GeneTranscriptPositionBiotype
ENSG00000148572 (NRBF2)
nuclear receptor binding factor 2 		ENST00000277746 (NRBF2-001) 63133290-63155026 protein_coding
ENST00000435510 (NRBF2-201) 63133247-63155031 protein_coding
ENST00000611479 (NRBF2-202) 63133305-63154427 protein_coding
ENSG00000171988 (JMJD1C)
jumonji domain containing 1C 		ENST00000327520 (JMJD1C-002) 63176800-63207725 protein_coding
ENST00000399262 (JMJD1C-001) 63167221-63465881 protein_coding
ENST00000402544 (JMJD1C-010) 63167348-63269187 processed_transcript
ENST00000467356 (JMJD1C-003) 63167221-63176555 retained_intron
ENST00000469152 (JMJD1C-007) 63215424-63268875 processed_transcript
ENST00000483298 (JMJD1C-006) 63193110-63194694 processed_transcript
ENST00000489372 (JMJD1C-008) 63215438-63269253 processed_transcript
ENST00000490669 (JMJD1C-004) 63192939-63193649 processed_transcript
ENST00000497922 (JMJD1C-005) 63189287-63193337 processed_transcript
ENST00000542921 (JMJD1C-201) 63167590-63269066 protein_coding
ENSG00000224301 (RP11-144G16.1)
 ENST00000433019 (RP11-144G16.1-001) 63123938-63125537 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007NX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
EGR2 UCNEbase 10090 10:67256061-67368582
GeneTranscriptPositionBiotype
ENSMUSG00000037876 (Jmjd1c)
jumonji domain containing 1C 		ENSMUST00000051446 (Jmjd1c-201) 67127258-67256326 protein_coding
ENSMUST00000173187 (Jmjd1c-011) 67217740-67218356 retained_intron
ENSMUST00000173236 (Jmjd1c-004) 67238922-67245418 retained_intron
ENSMUST00000173295 (Jmjd1c-010) 67096405-67158243 retained_intron
ENSMUST00000173661 (Jmjd1c-005) 67185749-67216171 retained_intron
ENSMUST00000173689 (Jmjd1c-001) 67185750-67256318 protein_coding
ENSMUST00000173762 (Jmjd1c-003) 67238148-67252672 protein_coding
ENSMUST00000173949 (Jmjd1c-006) 67185753-67191750 retained_intron
ENSMUST00000174062 (Jmjd1c-007) 67096125-67191748 retained_intron
ENSMUST00000174317 (Jmjd1c-008) 67096492-67224962 protein_coding
ENSMUST00000174408 (Jmjd1c-009) 67127258-67256318 protein_coding
ENSMUSG00000075000 (Nrbf2)
nuclear receptor binding factor 2 		ENSMUST00000077839 (Nrbf2-001) 67266689-67285305 protein_coding
ENSMUST00000159002 (Nrbf2-002) 67267841-67285180 protein_coding

Mus musculus Ensembl (GRCm38)

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CIL_0007NX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
EGR2 UCNEbase 7955 12:9304342-9336523
GeneTranscriptPositionBiotype
ENSDARG00000023591 (nrbf2b)
nuclear receptor binding factor 2b 		ENSDART00000031676 (nrbf2b-001) 9323887-9333929 protein_coding
ENSDART00000141883 (nrbf2b-002) 9323926-9328569 retained_intron
ENSDARG00000079939 (jmjd1cb)
jumonji domain containing 1Cb 		ENSDART00000113148 (jmjd1cb-201) 9336269-9572004 processed_transcript
ENSDART00000152738 (jmjd1cb-002) 9345131-9349566 retained_intron

Danio rerio Ensembl (Zv9)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007NX_0001ENSG00000148572ENST00000277746ENST00000435510ENST00000611479ENSG00000171988ENST00000327520ENST00000399262ENST00000402544ENST00000467356ENST00000469152ENST00000483298ENST00000489372ENST00000490669ENST00000497922ENST00000542921ENSG00000224301ENST00000433019CIL_0007NX_0002ENSMUSG00000037876ENSMUST00000051446ENSMUST00000173187ENSMUST00000173236ENSMUST00000173295ENSMUST00000173661ENSMUST00000173689ENSMUST00000173762ENSMUST00000173949ENSMUST00000174062ENSMUST00000174317ENSMUST00000174408ENSMUSG00000075000ENSMUST00000077839ENSMUST00000159002CIL_0007NX_0003ENSDARG00000023591ENSDART00000031676ENSDART00000141883ENSDARG00000079939ENSDART00000113148ENSDART00000152738
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007NX_0001ENSG00000148572ENST00000277746ENST00000435510ENST00000611479ENSG00000171988ENST00000327520ENST00000399262ENST00000402544ENST00000467356ENST00000542921ENSG00000224301ENST00000433019CIL_0007NX_0002ENSMUSG00000037876ENSMUST00000051446ENSMUST00000173236ENSMUST00000173295ENSMUST00000173689ENSMUST00000173762ENSMUST00000174317ENSMUST00000174408ENSMUSG00000075000ENSMUST00000077839ENSMUST00000159002CIL_0007NX_0003ENSDARG00000023591ENSDART00000031676ENSDARG00000079939ENSDART00000113148
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148572 ENST00000277746 6.527±0.00 1.817±0.00 N/A 6.607±0.00 3.529±2.57 3.685±0.00 2.302±0.00 5.044±0.00 5.211±4.77 3.282±2.59 6.186±0.00 4.313±1.83 7.027±1.93 4.000±2.11
ENST00000435510 N/A 3.139±0.00 N/A 1.061±0.00 0.803±0.00 2.454±0.00 N/A N/A N/A N/A 1.046±0.00 N/A N/A 1.406±0.00
ENST00000611479 N/A N/A 1.152±0.00 N/A N/A N/A N/A N/A N/A 0.932±0.00 N/A 1.394±0.00 3.996±0.00 1.566±0.00
ENSG00000171988 ENST00000327520 N/A N/A N/A N/A 2.994±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399262 1.871±0.00 1.467±0.00 N/A 1.011±0.00 1.622±0.49 1.878±0.86 0.854±0.00 1.701±0.00 0.716±0.00 2.139±0.70 1.195±0.22 3.814±2.24 0.973±0.37 4.225±0.86
ENST00000402544 N/A N/A N/A 0.715±0.00 N/A N/A N/A N/A N/A N/A 0.482±0.00 N/A N/A N/A
ENST00000467356 N/A 4.277±0.00 N/A N/A 3.383±0.00 N/A N/A 6.204±0.00 N/A N/A N/A 10.168±0.00 1.487±0.00 N/A
ENST00000469152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542921 2.665±0.00 1.355±0.00 N/A 1.243±0.00 2.482±1.30 2.204±0.00 1.264±0.05 0.855±0.00 2.011±0.00 4.561±0.00 0.642±0.00 1.893±0.68 N/A 2.517±0.00
ENSG00000224301 ENST00000433019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037876 ENSMUST00000051446 N/A 1.649±0.00 N/A N/A 1.263±0.21 2.170±0.00 N/A 0.736±0.00 N/A N/A N/A 2.286±0.84 N/A 1.216±0.00
ENSMUST00000173187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173236 N/A N/A N/A 8.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173295 N/A 2.364±0.95 N/A N/A N/A 4.675±0.07 N/A N/A N/A N/A N/A 3.476±0.29 N/A N/A
ENSMUST00000173661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173689 2.218±0.88 1.660±0.57 N/A N/A 2.342±0.83 2.473±0.65 0.786±0.18 1.533±0.49 1.639±0.76 3.107±0.19 0.591±0.20 2.569±0.88 1.341±0.22 N/A
ENSMUST00000173762 N/A N/A 6.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174317 2.649±1.34 6.005±0.65 N/A N/A 5.593±1.27 5.956±0.94 1.902±0.22 2.184±0.34 1.891±0.41 4.965±0.78 N/A 6.261±1.79 N/A 1.663±0.08
ENSMUST00000174408 2.403±0.96 N/A 7.143±1.74 8.099±1.52 1.693±0.97 1.649±0.45 2.046±0.29 1.294±0.49 1.794±0.48 2.612±0.30 2.018±0.41 4.436±3.59 6.185±2.96 3.853±1.14
ENSMUSG00000075000 ENSMUST00000077839 6.669±0.72 16.976±6.58 9.331±0.37 5.135±0.90 7.039±2.82 6.058±2.84 2.095±0.15 4.339±0.64 5.893±1.67 5.020±0.50 6.516±1.00 7.025±2.49 7.585±1.28 1.356±0.56
ENSMUST00000159002 N/A N/A N/A N/A N/A 3.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000023591 ENSDART00000031676 N/A N/A N/A 5.464±1.08 N/A N/A 4.842±1.98 5.496±0.70 1.556±0.00 N/A 5.463±0.00 N/A N/A N/A
ENSDART00000141883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079939 ENSDART00000113148 N/A N/A N/A 12.523±5.63 N/A N/A 8.704±3.69 6.494±4.83 0.576±0.00 N/A 10.847±0.00 N/A N/A N/A
ENSDART00000152738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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