C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylinositol glycan anchor biosynthesis, class T
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000279035 PIGT-004 ENSG00000124155 9606 + 20:45416110-45426042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000279035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000279035 23.358±0.00 22.059±0.00 2.659±0.00 19.429±0.00 12.433±7.22 8.350±5.54 14.139±0.00 5.662±4.55 5.302±4.17 10.010±9.17 15.892±13.25 23.986±5.39 21.410±3.15 20.789±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003L0 CIL_0003L0_0001 CGP 20:45406057-45426244
CIL_0006IJ CIL_0006IJ_0001 CGP 20:45416077-45481532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003923 TAS GPI-anchor transamidase activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006501 TAS C-terminal protein lipidation
GO:0016020 IDA membrane
GO:0016255 IEA:TAS attachment of GPI anchor to protein
GO:0030176 NAS integral component of endoplasmic reticulum membrane
GO:0042765 TAS:IEA GPI-anchor transamidase complex
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000152522 Pigt-002 nonsense_mediated_decay Mus_musculus 0 1459
ENSMUST00000103101 Pigt-001 protein_coding Mus_musculus 0 1459
ENSMUST00000117066 Pigt-003 protein_coding Mus_musculus 0 854
ENSMUST00000131976 Pigt-005 retained_intron Mus_musculus 0 582
ENSMUST00000138038 Pigt-004 retained_intron Mus_musculus 0 431
ENSMUST00000122406 Gm12929-001 processed_pseudogene Mus_musculus 0 303

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