C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroblastoma amplified sequence
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281513 NBAS-001 ENSG00000151779 9606 - 2:15166909-15561330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281513
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281513 3.853±0.00 1.391±0.00 2.360±0.00 4.038±0.30 4.012±0.70 2.294±1.40 4.512±1.43 2.395±0.00 1.384±0.63 1.856±0.25 3.440±2.69 2.627±1.83 2.450±0.74 5.854±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Y CIL_00001Y_0002 CGP 2:14632686-15561330
CIL_00001Z CIL_00001Z_0002 CGP 2:15166909-15631111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000956 IMP nuclear-transcribed mRNA catabolic process
GO:0005737 IEA cytoplasm
GO:0016020 IDA membrane
GO:2000623 IMP negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042953 Nbas-201 protein_coding Mus_musculus 0 4689

Loading