C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ZFP36 ring finger protein-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282388 ZFP36L2-001 ENSG00000152518 9606 - 2:43222402-43226609 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282388 60.859±0.00 18.871±0.00 8.221±0.00 8.922±6.08 38.138±21.07 56.201±49.54 14.006±13.50 36.264±30.02 19.898±11.12 130.289±111.34 24.755±22.58 72.135±31.10 15.929±1.96 34.576±21.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XL CIL_0001XL_0001 CGP 2:42767089-43226609
CIL_0008SZ CIL_0008SZ_0001 VISTA 2:42917582-43520159
CIL_0001XK CIL_0001XK_0001 CGP 2:43222402-43596046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 IEA nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006402 ISS mRNA catabolic process
GO:0008283 TAS cell proliferation
GO:0017091 IDA AU-rich element binding
GO:0030097 ISS hemopoiesis
GO:0033077 IEA T cell differentiation in thymus
GO:0035019 ISS somatic stem cell maintenance
GO:0035925 IEA mRNA 3'-UTR AU-rich region binding
GO:0043488 IEA regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048103 ISS somatic stem cell division
GO:0060216 ISS definitive hemopoiesis
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000737 ISS negative regulation of stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060366 Zfp36l2-001 protein_coding Mus_musculus 0 1720

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