C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 36, C3H type-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060366 Zfp36l2-001 ENSMUSG00000045817 10090 - 17:84183931-84187947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060366 43.226±17.74 56.662±11.11 40.335±0.47 8.665±3.07 81.233±43.67 107.727±9.54 8.890±2.32 21.652±3.83 17.418±10.22 66.135±15.36 3.979±0.52 77.101±29.93 21.026±3.23 2.727±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XL CIL_0001XL_0002 CGP 17:83831356-84187947
CIL_0008SZ CIL_0008SZ_0002 VISTA 17:83879514-84482025
CIL_0001XK CIL_0001XK_0002 CGP 17:84183931-84466196

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 IDA nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006402 IDA mRNA catabolic process
GO:0017091 IEA AU-rich element binding
GO:0030097 IMP hemopoiesis
GO:0033077 IGI T cell differentiation in thymus
GO:0035019 IMP somatic stem cell maintenance
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0043488 IDA regulation of mRNA stability
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048103 IMP somatic stem cell division
GO:0060216 IMP definitive hemopoiesis
GO:1900153 IDA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000737 IMP negative regulation of stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282388 ZFP36L2-001 protein_coding Homo_sapiens 0 1720
ENST00000336440 ZFP36L1-002 protein_coding Homo_sapiens 0 279
ENST00000439696 ZFP36L1-001 protein_coding Homo_sapiens 0 279
ENST00000555997 ZFP36L1-003 protein_coding Homo_sapiens 0 279
ENST00000557022 ZFP36L1-006 protein_coding Homo_sapiens 0 279
ENST00000557086 ZFP36L1-004 protein_coding Homo_sapiens 0 279
ENST00000620081 ZFP36L2-201 protein_coding Homo_sapiens 0 1727

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