C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1909 VISTA 9606 2:42917582-43520159
GeneTranscriptPositionBiotype
ENSG00000115970 (THADA)
thyroid adenoma associated 		ENST00000398653 (THADA-003) 43230852-43596038 nonsense_mediated_decay
ENST00000402360 (THADA-007) 43552068-43592420 protein_coding
ENST00000402796 (THADA-010) 43344122-43574813 nonsense_mediated_decay
ENST00000403856 (THADA-005) 43562218-43596007 protein_coding
ENST00000404790 (THADA-004) 43556093-43596023 protein_coding
ENST00000405006 (THADA-002) 43230852-43595974 protein_coding
ENST00000405975 (THADA-001) 43230836-43596046 protein_coding
ENST00000407351 (THADA-009) 43230851-43570515 protein_coding
ENST00000408045 (THADA-021) 43343001-43596038 nonsense_mediated_decay
ENST00000436947 (THADA-019) 43484278-43508753 processed_transcript
ENST00000462185 (THADA-011) 43505718-43541303 processed_transcript
ENST00000467668 (THADA-017) 43231207-43277301 processed_transcript
ENST00000469323 (THADA-012) 43428103-43486672 processed_transcript
ENST00000473004 (THADA-014) 43333155-43398058 processed_transcript
ENST00000474159 (THADA-006) 43556349-43592416 nonsense_mediated_decay
ENST00000485018 (THADA-016) 43286985-43293066 retained_intron
ENST00000485353 (THADA-013) 43344157-43463259 processed_transcript
ENST00000486735 (THADA-020) 43292992-43391922 processed_transcript
ENST00000497770 (THADA-015) 43344121-43372237 processed_transcript
ENSG00000152518 (ZFP36L2)
ZFP36 ring finger protein-like 2 		ENST00000282388 (ZFP36L2-001) 43222402-43226609 protein_coding
ENST00000620081 (ZFP36L2-201) 43224235-43226379 protein_coding
ENSG00000207087 (RNU6-242P)
RNA, U6 small nuclear 242, pseudogene 		ENST00000384359 (RNU6-242P-201) 43091388-43091494 snRNA
ENSG00000224739 (AC016735.1)
 ENST00000457457 (AC016735.1-001) 43001355-43006060 lincRNA
ENSG00000230587 (AC093609.1)
 ENST00000434020 (AC093609.1-001) 43097746-43102691 lincRNA
ENSG00000231826 (AC016735.2)
 ENST00000422351 (AC016735.2-001) 43027853-43039543 lincRNA
ENST00000425212 (AC016735.2-003) 43033233-43039541 lincRNA
ENST00000449766 (AC016735.2-002) 43032501-43039547 lincRNA
ENSG00000233978 (AC016735.3)
 ENST00000438736 (AC016735.3-001) 43041193-43043782 lincRNA
ENSG00000252804 (RNU6-958P)
RNA, U6 small nuclear 958, pseudogene 		ENST00000516995 (RNU6-958P-201) 43408307-43408412 snRNA
ENSG00000264071 (RN7SL531P)
RNA, 7SL, cytoplasmic 531, pseudogene 		ENST00000578464 (RN7SL531P-201) 43492032-43492313 misc_RNA
ENSG00000279873 (LINC01126)
long intergenic non-protein coding RNA 1126 		ENST00000623515 (LINC01126-001) 43227341-43228855 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008SZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1909 VISTA 10090 17:83879514-84482025
GeneTranscriptPositionBiotype
ENSMUSG00000024251 (Thada)
thyroid adenoma associated 		ENSMUST00000047524 (Thada-201) 84190056-84466196 protein_coding
ENSMUSG00000045817 (Zfp36l2)
zinc finger protein 36, C3H type-like 2 		ENSMUST00000060366 (Zfp36l2-001) 84183931-84187947 protein_coding
ENSMUSG00000088193 (Gm23905)
predicted gene, 23905 		ENSMUST00000157568 (Gm23905-201) 83947588-83947696 rRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SZ_0001ENSG00000115970ENST00000398653ENST00000402360ENST00000402796ENST00000403856ENST00000404790ENST00000405006ENST00000405975ENST00000407351ENST00000408045ENST00000436947ENST00000462185ENST00000467668ENST00000469323ENST00000473004ENST00000474159ENST00000485018ENST00000485353ENST00000486735ENST00000497770ENSG00000152518ENST00000282388ENST00000620081ENSG00000207087ENST00000384359ENSG00000224739ENST00000457457ENSG00000230587ENST00000434020ENSG00000231826ENST00000422351ENST00000425212ENST00000449766ENSG00000233978ENST00000438736ENSG00000252804ENST00000516995ENSG00000264071ENST00000578464ENSG00000279873ENST00000623515CIL_0008SZ_0002ENSMUSG00000024251ENSMUST00000047524ENSMUSG00000045817ENSMUST00000060366ENSMUSG00000088193ENSMUST00000157568
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SZ_0001ENSG00000115970ENST00000398653ENST00000402360ENST00000402796ENST00000403856ENST00000405006ENST00000405975ENST00000407351ENST00000474159ENSG00000152518ENST00000282388ENSG00000207087ENST00000384359ENSG00000224739ENST00000457457ENSG00000230587ENST00000434020ENSG00000231826ENST00000422351ENST00000425212ENST00000449766ENSG00000233978ENST00000438736ENSG00000252804ENST00000516995ENSG00000264071ENST00000578464ENSG00000279873ENST00000623515CIL_0008SZ_0002ENSMUSG00000024251ENSMUST00000047524ENSMUSG00000045817ENSMUST00000060366ENSMUSG00000088193ENSMUST00000157568
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115970 ENST00000398653 N/A 1.148±0.00 1.513±0.00 N/A 0.894±0.00 N/A N/A N/A 0.879±0.00 1.073±0.00 1.475±0.00 N/A 0.796±0.00 N/A
ENST00000402360 N/A N/A N/A N/A 1.935±0.00 N/A N/A 2.125±0.00 2.923±0.00 N/A 1.181±0.00 7.401±0.00 N/A N/A
ENST00000402796 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.613±0.00 N/A 3.741±0.81 N/A N/A
ENST00000403856 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.879±0.00 N/A N/A N/A N/A
ENST00000404790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405006 N/A N/A N/A 0.305±0.00 0.854±0.00 0.907±0.00 0.415±0.01 0.473±0.00 0.996±0.00 N/A N/A N/A 0.518±0.00 N/A
ENST00000405975 2.180±0.00 1.633±0.00 N/A 0.881±0.11 1.573±0.00 2.122±0.42 1.231±0.00 2.171±0.00 1.254±0.00 1.394±0.28 0.913±0.00 2.362±0.96 1.103±0.41 3.483±0.71
ENST00000407351 2.054±0.00 4.040±0.00 N/A 0.719±0.00 2.923±0.00 N/A 1.028±0.00 2.206±0.45 0.902±0.00 1.902±0.00 1.727±0.84 3.902±0.97 1.981±1.13 5.301±1.85
ENST00000408045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474159 N/A N/A N/A N/A N/A N/A N/A 2.067±0.00 N/A N/A 0.931±0.00 N/A N/A N/A
ENST00000485018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152518 ENST00000282388 60.859±0.00 18.871±0.00 8.221±0.00 8.922±6.08 38.138±21.07 56.201±49.54 14.006±13.50 36.264±30.02 19.898±11.12 130.289±111.34 24.755±22.58 72.135±31.10 15.929±1.96 34.576±21.63
ENST00000620081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207087 ENST00000384359 0.191±0.00 N/A N/A N/A N/A N/A 1.260±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000224739 ENST00000457457 N/A 0.127±0.00 N/A 0.212±0.00 N/A N/A N/A 0.286±0.00 1.146±0.00 N/A N/A 0.412±0.00 0.348±0.00 0.067±0.00
ENSG00000230587 ENST00000434020 0.209±0.00 0.595±0.00 N/A 0.054±0.00 0.149±0.02 0.297±0.00 0.589±0.00 0.412±0.00 0.740±0.62 0.591±0.23 0.189±0.10 0.142±0.02 0.069±0.00 0.384±0.09
ENSG00000231826 ENST00000422351 0.056±0.00 0.147±0.00 N/A 0.614±0.00 0.420±0.30 0.149±0.00 0.031±0.02 0.076±0.00 0.016±0.00 0.026±0.00 0.008±0.00 0.104±0.07 0.548±0.21 0.245±0.01
ENST00000425212 N/A N/A N/A N/A N/A N/A 0.024±0.00 0.599±0.00 N/A 0.026±0.00 N/A N/A 0.387±0.00 0.104±0.00
ENST00000449766 N/A N/A N/A 0.204±0.09 N/A N/A N/A 0.265±0.00 N/A N/A N/A 0.308±0.17 0.519±0.00 0.090±0.00
ENSG00000233978 ENST00000438736 N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.01
ENSG00000252804 ENST00000516995 N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000264071 ENST00000578464 1.047±0.00 2.058±0.00 N/A 1.358±0.00 1.579±0.00 0.633±0.08 0.614±0.24 1.338±0.00 0.604±0.00 1.485±0.00 0.597±0.00 2.014±1.46 0.133±0.00 1.706±0.90
ENSG00000279873 ENST00000623515 0.232±0.00 1.006±0.00 N/A 0.055±0.00 0.168±0.05 0.056±0.01 0.042±0.02 0.276±0.00 0.010±0.00 N/A N/A 0.263±0.11 0.051±0.01 0.080±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024251 ENSMUST00000047524 2.610±1.26 2.708±0.73 1.982±0.25 1.939±0.82 2.080±0.92 0.755±0.29 1.019±0.11 1.520±0.45 1.102±0.55 2.300±0.83 0.796±0.15 2.868±1.27 1.352±0.44 3.510±1.40
ENSMUSG00000045817 ENSMUST00000060366 43.226±17.74 56.662±11.11 40.335±0.47 8.665±3.07 81.233±43.67 107.727±9.54 8.890±2.32 21.652±3.83 17.418±10.22 66.135±15.36 3.979±0.52 77.101±29.93 21.026±3.23 2.727±1.06
ENSMUSG00000088193 ENSMUST00000157568 N/A N/A N/A N/A 1970.670±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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