C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleotide binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000283027 NUBP1-001 ENSG00000103274 9606 + 16:10743845-10769351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283027
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283027 3.585±0.00 9.633±0.00 0.293±0.00 1.144±0.00 3.728±0.20 4.306±1.77 4.046±2.90 2.400±0.00 2.490±1.78 2.920±0.81 4.360±0.76 5.999±4.35 14.197±4.61 5.315±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074Y CIL_00074Y_0001 CGP 16:10627501-10769351
CIL_00074Z CIL_00074Z_0001 CGP 16:10743786-10818794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 TAS nucleotide binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006879 IMP cellular iron ion homeostasis
GO:0010826 IEA negative regulation of centrosome duplication
GO:0016049 IMP cell growth
GO:0016226 IMP iron-sulfur cluster assembly
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0051536 IDA iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:0051642 IEA centrosome localization
GO:0070062 IDA extracellular vesicular exosome
GO:0072697 IEA protein localization to cell cortex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023146 Nubp1-001 protein_coding Mus_musculus 0 1022
ENSMUST00000156338 Nubp1-006 retained_intron Mus_musculus 0 652
ENSMUST00000129280 Nubp1-003 retained_intron Mus_musculus 0 508
ENSMUST00000142771 Nubp1-002 retained_intron Mus_musculus 1e-27 128

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