C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group F, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000291442 NR2F6-001 ENSG00000160113 9606 - 19:17231883-17245940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291442 19.507±0.00 34.123±0.00 1.341±0.00 11.506±4.92 32.730±28.47 20.385±11.02 17.404±14.46 30.710±22.38 33.797±30.18 15.507±13.92 14.702±10.46 34.798±18.28 44.376±14.79 21.660±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010P CIL_00010P_0001 CGP 19:17226204-17245940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 TAS DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA:TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004887 TAS thyroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043153 IEA entrainment of circadian clock by photoperiod
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0048666 IEA neuron development
GO:0050965 IEA detection of temperature stimulus involved in sensory perception of pain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002466 Nr2f6-001 protein_coding Mus_musculus 0 1456
ENSMUST00000132630 Nr2f6-002 processed_transcript Mus_musculus 0 645
ENSMUST00000127443 Nr2f6-008 processed_transcript Mus_musculus 0 610
ENSMUST00000124732 Nr2f6-007 protein_coding Mus_musculus 0 610
ENSMUST00000137058 Nr2f6-006 protein_coding Mus_musculus 0 520
ENSMUST00000110052 Ocel1-003 protein_coding Mus_musculus 0 520
ENSMUST00000032768 Nr2f2-001 protein_coding Mus_musculus 0 209
ENSMUST00000091458 Nr2f1-001 protein_coding Mus_musculus 0 198
ENSMUST00000155463 Nr2f6-005 processed_transcript Mus_musculus 0.00000002 66
ENSMUST00000156270 Nr2f6-004 processed_transcript Mus_musculus 0.00000002 66
ENSMUST00000137734 Nr2f6-003 processed_transcript Mus_musculus 0.00000002 66

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