C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 9A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000291539 PDE9A-016 ENSG00000160191 9606 + 21:42653755-42775509 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000291539
Transcript ID Adrenal Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000291539 2.396±0.00 0.606±0.00 1.157±0.00 6.369±3.33 1.052±0.00 7.010±0.00 2.551±0.86 3.828±1.26 0.585±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0001 VISTA 21:42290762-42894212
CIL_0001JT CIL_0001JT_0001 CGP 21:42496008-42775509
CIL_0001D2 CIL_0001D2_0002 CGP 21:42653636-42879568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 TAS:IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0007165 TAS:IEA signal transduction
GO:0007596 TAS blood coagulation
GO:0008152 IEA metabolic process
GO:0019934 IEA cGMP-mediated signaling
GO:0042995 IEA cell projection
GO:0043204 IEA perikaryon
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000137927 Pde9a-005 nonsense_mediated_decay Mus_musculus 0 1489
ENSMUST00000127929 Pde9a-002 protein_coding Mus_musculus 0 1489
ENSMUST00000134525 Pde9a-006 protein_coding Mus_musculus 0 1489
ENSMUST00000047168 Pde9a-001 protein_coding Mus_musculus 0 1489
ENSMUST00000131417 Pde9a-004 nonsense_mediated_decay Mus_musculus 0 1450
ENSMUST00000143549 Pde9a-003 nonsense_mediated_decay Mus_musculus 0 1450
ENSMUST00000124902 Pde9a-008 nonsense_mediated_decay Mus_musculus 0 797
ENSMUST00000154567 Pde9a-007 retained_intron Mus_musculus 0 750
ENSMUST00000130547 Pde9a-011 retained_intron Mus_musculus 0 647
ENSMUST00000155395 Pde9a-012 retained_intron Mus_musculus 0 638
ENSDART00000114937 CR848033.1-201 protein_coding Danio_rerio 0 520
ENSDART00000111973 CABZ01044346.1-201 protein_coding Danio_rerio 0 512
ENSMUST00000154392 Pde9a-013 protein_coding Mus_musculus 0 361
ENSMUST00000155113 Pde9a-014 processed_transcript Mus_musculus 0.00000000003 75

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