C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 13 (sodium-dependent citrate transporter), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000293800 SLC13A5-004 ENSG00000141485 9606 - 17:6684723-6713369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverOvaryPlacentaENST00000293800
Transcript ID Adipose Bladder Breast Colon Liver Ovary Placenta
ENST00000293800 0.307±0.00 0.020±0.00 0.019±0.00 0.096±0.00 142.393±0.00 0.093±0.00 0.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HE CIL_0000HE_0001 CGP 17:6684713-6775647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021161 Slc13a5-001 protein_coding Mus_musculus 0 917
ENSMUST00000137701 Slc13a5-002 protein_coding Mus_musculus 0 322
ENSMUST00000140167 Slc13a5-003 protein_coding Mus_musculus 4e-36 158

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