C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168514 Capn8-202 ENSMUSG00000038599 10090 + 1:182565007-182606526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168514 0.016±0.00 0.035±0.00 0.014±0.00 0.037±0.00 0.350±0.00 2.129±0.06 0.013±0.00 0.017±0.01 0.024±0.01 0.140±0.04 0.041±0.00 0.115±0.05 0.175±0.21 0.138±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MP CIL_0005MP_0002 CGP 1:182467256-182632352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005737 IBA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006508 IBA proteolysis
GO:0007586 IEA digestion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295006 CAPN2-001 protein_coding Homo_sapiens 0 398
ENST00000318023 CAPN3-201 protein_coding Homo_sapiens 1e-31 143
ENST00000349748 CAPN3-005 protein_coding Homo_sapiens 1e-31 143
ENST00000357568 CAPN3-008 protein_coding Homo_sapiens 1e-31 143
ENST00000366872 CAPN8-201 protein_coding Homo_sapiens 0 1223
ENST00000366873 CAPN8-001 protein_coding Homo_sapiens 0 1243
ENST00000397163 CAPN3-009 protein_coding Homo_sapiens 1e-31 143
ENST00000419193 CAPN8-002 protein_coding Homo_sapiens 0 1223
ENST00000433674 CAPN2-201 protein_coding Homo_sapiens 0 390
ENST00000434648 CAPN2-009 protein_coding Homo_sapiens 0 257
ENST00000465098 CAPN8-004 protein_coding Homo_sapiens 0 580
ENST00000467384 CAPN8-003 nonsense_mediated_decay Homo_sapiens 0 708
ENST00000525760 CAPN8-009 retained_intron Homo_sapiens 0 448

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