C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase, POLQ-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295488 HELQ-001 ENSG00000163312 9606 - 4:83407343-83455856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartMuscleOvaryPlacentaTestisENST00000295488
Transcript ID Adipose Brain Breast Colon Heart Muscle Ovary Placenta Testis
ENST00000295488 0.260±0.00 0.208±0.00 0.183±0.00 0.736±0.00 0.760±0.00 0.992±0.00 1.140±0.06 0.957±0.00 3.927±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JB CIL_0006JB_0001 CGP 4:83292461-83455856
CIL_0006JA CIL_0006JA_0001 CGP 4:83407343-83469735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044684 Helq-001 protein_coding Mus_musculus 0 2230
ENSMUST00000133845 Helq-003 protein_coding Mus_musculus 0 1764
ENSMUST00000151201 Helq-002 nonsense_mediated_decay Mus_musculus 0 628
ENSMUST00000144948 Helq-005 retained_intron Mus_musculus 0 416
ENSMUST00000135102 Helq-007 retained_intron Mus_musculus 0 259
ENSMUST00000155362 Helq-008 nonsense_mediated_decay Mus_musculus 0 252

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