C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase, POLQ-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044684 Helq-001 ENSMUSG00000035266 10090 - 5:100762145-100798598 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044684 0.952±0.08 0.456±0.06 1.527±0.06 2.554±1.06 0.665±0.17 0.856±0.11 0.381±0.11 0.915±0.23 2.270±1.94 0.596±0.14 0.430±0.11 1.018±0.34 2.384±1.12 0.973±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JB CIL_0006JB_0002 CGP 5:100679484-100798598
CIL_000820 CIL_000820_0002 VISTA 5:100731954-101333223
CIL_0006JA CIL_0006JA_0002 CGP 5:100762145-100804471

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006259 ISO DNA metabolic process
GO:0017116 ISO single-stranded DNA-dependent ATP-dependent DNA helicase activity
GO:0017117 ISO single-stranded DNA-dependent ATP-dependent DNA helicase complex
GO:0032508 ISO DNA duplex unwinding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295488 HELQ-001 protein_coding Homo_sapiens 0 2230
ENST00000508591 HELQ-003 nonsense_mediated_decay Homo_sapiens 0 1408
ENST00000510985 HELQ-002 protein_coding Homo_sapiens 0 1574
ENST00000512539 HELQ-004 processed_transcript Homo_sapiens 0 416

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