C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 58
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295628 LRRC58-001 ENSG00000163428 9606 - 3:120324509-120349339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295628 3.845±0.00 3.989±0.00 1.143±0.00 2.423±1.50 4.908±0.20 3.822±0.05 1.783±0.64 4.214±0.92 4.118±2.52 2.513±0.61 0.894±0.36 4.254±1.70 1.738±0.91 2.957±1.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SH CIL_0002SH_0002 CGP 3:120164645-120349339
CIL_0005BO CIL_0005BO_0002 CGP 3:120324509-120451253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1413
ENSMUST00000120195 Gm14712-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000078259 Nsl1-001 protein_coding Mus_musculus 0.000000000002 81
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000000003 77

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