C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 58
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078717 Lrrc58-001 ENSMUSG00000034158 10090 + 16:37868389-37888858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078717
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078717 26.196±1.87 48.541±6.38 13.741±0.57 9.296±3.62 23.022±8.70 10.044±0.75 7.271±0.24 18.278±1.71 6.624±2.95 25.306±3.77 3.568±0.31 25.734±9.65 10.050±3.88 6.999±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PX CIL_0006PX_0002 CGP 16:37776873-37888858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1085
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1085
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1016
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 872
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 854
ENSDART00000080664 protein_coding Danio_rerio 0 832
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 817
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 760
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 743
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 710
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 702
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 516
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 512
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 505
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 263
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 7.00649e-43 182
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 2e-28 134
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 765
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 917
ENST00000295628 LRRC58-001 protein_coding Homo_sapiens 0 1413
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1637
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1168
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 845
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1306
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 1308
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 279
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 833
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 1037
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 992
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 1101
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 845
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 691
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 1118
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 730
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 0 228
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 828
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 761
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 303
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 1024
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 889
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 837
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 534
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 307
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 754
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 619
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 828
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 1360
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 664
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 754
ENST00000431775 ACTG1P3-001 processed_pseudogene Homo_sapiens 0 660
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 435
ENST00000435871 ACTBP12-001 transcribed_processed_pseudogene Homo_sapiens 0 379
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 950
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 259
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 612
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 305
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 990
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 568
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 1301
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 905
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 765
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 1360
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 337
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 612
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 529
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 375
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 239
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 922
ENST00000486001 RP11-4K3__A.5-001 processed_pseudogene Homo_sapiens 0 444
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 837
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 634
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 846
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 640
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 390
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 276
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 527
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 529
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 239
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 278
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 669
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 381
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1168
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 928
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1168
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 588
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1168
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 592
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1131
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 582
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1168
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 795
ENST00000594933 ACTBP12-002 processed_transcript Homo_sapiens 0 387
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1168

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