C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO1/sentrin/SMT3 specific peptidase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296257 SENP2-001 ENSG00000163904 9606 + 3:185586174-185633551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296257 4.740±0.00 2.384±0.00 0.661±0.00 4.288±1.63 4.117±0.00 2.001±0.00 1.731±1.35 2.973±0.00 1.253±0.48 1.105±0.45 2.235±0.69 11.651±8.26 4.644±1.90 13.113±3.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0006RE CIL_0006RE_0001 CGP 3:185506262-185633551
CIL_0006RH CIL_0006RH_0001 CGP 3:185582496-185825056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005643 IDA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0007507 IEA heart development
GO:0008234 IEA cysteine-type peptidase activity
GO:0009950 IEA dorsal/ventral axis specification
GO:0015031 IEA protein transport
GO:0016055 IEA Wnt signaling pathway
GO:0016604 IEA nuclear body
GO:0016605 ISS PML body
GO:0016925 TAS protein sumoylation
GO:0016926 IMP protein desumoylation
GO:0016929 IDA SUMO-specific protease activity
GO:0019904 IEA protein domain specific binding
GO:0030111 NAS regulation of Wnt signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0032091 IEA negative regulation of protein binding
GO:0032875 IEA regulation of DNA endoreduplication
GO:0035562 IEA negative regulation of chromatin binding
GO:0043518 IEA negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051028 IEA mRNA transport
GO:0051246 IEA regulation of protein metabolic process
GO:0060707 IEA trophoblast giant cell differentiation
GO:0060711 IEA labyrinthine layer development
GO:0060712 IEA spongiotrophoblast layer development
GO:1901797 IEA negative regulation of signal transduction by p53 class mediator
GO:2000045 IEA regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023561 Senp2-201 protein_coding Mus_musculus 0 2532
ENSMUST00000119588 Gm5402-001 processed_pseudogene Mus_musculus 0 1515

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