C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 122
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296266 IFT122-002 ENSG00000163913 9606 + 3:129440139-129520345 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507
CIL_00030V CIL_00030V_0001 CGP 3:129440036-129535169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 ISS neural tube closure
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007227 IEA signal transduction downstream of smoothened
GO:0009953 IEA dorsal/ventral pattern formation
GO:0010172 ISS embryonic body morphogenesis
GO:0016020 IDA membrane
GO:0021914 IEA negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0030991 IDA intraciliary transport particle A
GO:0032391 ISS photoreceptor connecting cilium
GO:0035050 ISS embryonic heart tube development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035720 IEA intraciliary anterograde transport
GO:0035721 ISS intraciliary retrograde transport
GO:0036064 IEA ciliary basal body
GO:0042733 IEA embryonic digit morphogenesis
GO:0045879 ISS negative regulation of smoothened signaling pathway
GO:0048593 ISS camera-type eye morphogenesis
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060173 ISS limb development
GO:0060271 ISS cilium morphogenesis
GO:0060830 IEA ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 IEA smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0060971 IEA embryonic heart tube left/right pattern formation
GO:0061512 IMP protein localization to cilium
GO:0072372 ISS primary cilium
GO:0072594 IEA establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112923 Ift122-004 protein_coding Mus_musculus 0 4074
ENSMUST00000112925 Ift122-001 protein_coding Mus_musculus 0 3463
ENSMUST00000038234 Ift122-003 protein_coding Mus_musculus 0 3448
ENSMUST00000141305 Ift122-002 nonsense_mediated_decay Mus_musculus 0 2420
ENSMUST00000124283 Ift122-005 processed_transcript Mus_musculus 0 2008
ENSMUST00000155565 Ift122-006 retained_intron Mus_musculus 0 1048
ENSMUST00000149083 Ift122-008 processed_transcript Mus_musculus 0 549
ENSMUST00000146950 Ift122-011 processed_transcript Mus_musculus 0 440
ENSMUST00000138113 Ift122-009 processed_transcript Mus_musculus 0 438
ENSMUST00000125889 Ift122-007 processed_transcript Mus_musculus 0 279

Loading