C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00030X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172771-ENSG00000129071 CGP 9606 3:129401321-129440179
GeneTranscriptPositionBiotype
ENSG00000129071 (MBD4)
methyl-CpG binding domain protein 4 		ENST00000249910 (MBD4-001) 129430950-129440009 protein_coding
ENST00000393278 (MBD4-201) 129430952-129440179 protein_coding
ENST00000429544 (MBD4-003) 129430944-129440029 protein_coding
ENST00000503197 (MBD4-002) 129431266-129440007 protein_coding
ENST00000505883 (MBD4-006) 129437047-129439937 processed_transcript
ENST00000507208 (MBD4-009) 129432176-129440035 protein_coding
ENST00000509587 (MBD4-004) 129433859-129439940 processed_transcript
ENST00000509828 (MBD4-005) 129431455-129439927 nonsense_mediated_decay
ENST00000511009 (MBD4-010) 129432533-129433553 retained_intron
ENST00000515266 (MBD4-007) 129432577-129434103 retained_intron
ENSG00000172771 (EFCAB12)
EF-hand calcium binding domain 12 		ENST00000326085 (EFCAB12-201) 129401322-129428651 protein_coding
ENST00000503498 (EFCAB12-002) 129401326-129421583 retained_intron
ENST00000503957 (EFCAB12-004) 129411267-129428617 protein_coding
ENST00000505956 (EFCAB12-001) 129401321-129428651 protein_coding
ENST00000514900 (EFCAB12-003) 129401322-129418523 retained_intron
CIL_00030X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030321-ENSMUSG00000030322 CGP 10090 6:115810729-115853371
GeneTranscriptPositionBiotype
ENSMUSG00000030321 (Efcab12)
EF-hand calcium binding domain 12 		ENSMUST00000032468 (Efcab12-201) 115810729-115838412 protein_coding
ENSMUST00000124531 (Efcab12-001) 115810896-115838412 nonsense_mediated_decay
ENSMUST00000184428 (Efcab12-002) 115810896-115838412 protein_coding
ENSMUSG00000030322 (Mbd4)
methyl-CpG binding domain protein 4 		ENSMUST00000032469 (Mbd4-001) 115840697-115853371 protein_coding
ENSMUST00000122816 (Mbd4-003) 115847913-115853288 retained_intron
ENSMUST00000133830 (Mbd4-004) 115841199-115848705 processed_transcript
ENSMUST00000147282 (Mbd4-002) 115842344-115853365 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030X_0001ENSG00000129071ENST00000249910ENST00000393278ENST00000429544ENST00000503197ENST00000505883ENST00000507208ENST00000509587ENST00000509828ENST00000511009ENST00000515266ENSG00000172771ENST00000326085ENST00000503498ENST00000503957ENST00000505956ENST00000514900CIL_00030X_0002ENSMUSG00000030321ENSMUST00000032468ENSMUST00000124531ENSMUST00000184428ENSMUSG00000030322ENSMUST00000032469ENSMUST00000122816ENSMUST00000133830ENSMUST00000147282
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030X_0001ENSG00000129071ENST00000249910ENST00000429544ENST00000503197ENST00000507208ENST00000509828ENSG00000172771ENST00000326085ENST00000503498ENST00000503957ENST00000505956ENST00000514900CIL_00030X_0002ENSMUSG00000030321ENSMUST00000032468ENSMUST00000184428ENSMUSG00000030322ENSMUST00000032469ENSMUST00000122816ENSMUST00000133830ENSMUST00000147282
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129071 ENST00000249910 N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000393278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429544 4.533±0.00 7.690±0.00 2.216±0.00 4.392±0.39 4.210±0.16 3.529±0.00 1.618±0.77 6.975±0.00 3.263±1.11 3.788±0.00 0.986±0.00 5.456±3.10 3.281±1.46 N/A
ENST00000503197 3.978±0.00 7.032±0.00 N/A 5.108±0.00 2.685±0.00 4.155±0.00 3.534±0.00 5.718±0.00 5.269±0.00 3.216±1.34 1.881±1.27 4.577±1.14 2.768±0.47 11.836±0.00
ENST00000505883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507208 N/A N/A N/A N/A 2.600±0.34 N/A N/A 4.056±1.65 N/A 3.124±0.00 1.262±0.00 3.488±2.01 2.882±0.00 N/A
ENST00000509587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.279±0.00 N/A N/A N/A
ENST00000511009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172771 ENST00000326085 N/A 0.337±0.00 0.091±0.00 0.135±0.00 0.675±0.00 N/A 0.032±0.00 N/A 0.611±0.00 3.014±0.00 N/A 2.136±1.68 0.011±0.00 1.972±0.68
ENST00000503498 0.022±0.00 0.173±0.00 N/A 0.027±0.00 N/A 0.048±0.00 0.118±0.00 0.048±0.00 0.105±0.00 N/A 0.027±0.00 0.283±0.00 0.044±0.03 0.732±0.00
ENST00000503957 N/A N/A 0.358±0.00 0.255±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505956 N/A N/A 0.088±0.00 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A 0.011±0.00 N/A
ENST00000514900 N/A 0.218±0.00 N/A 0.025±0.00 0.070±0.00 0.036±0.00 N/A 0.291±0.00 0.295±0.00 0.953±0.00 N/A 0.416±0.29 N/A 1.158±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030321 ENSMUST00000032468 0.088±0.00 0.141±0.03 0.081±0.02 1.613±1.41 0.161±0.02 0.052±0.03 0.055±0.01 0.542±0.19 0.058±0.01 0.551±0.20 0.069±0.01 1.015±0.40 0.338±0.00 11.487±2.00
ENSMUST00000124531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184428 0.183±0.13 0.060±0.03 N/A N/A 0.145±0.02 0.119±0.02 0.044±0.01 0.334±0.13 0.047±0.02 0.530±0.00 0.042±0.02 1.112±0.30 0.132±0.02 3.189±1.25
ENSMUSG00000030322 ENSMUST00000032469 0.301±0.06 0.198±0.13 0.583±0.08 1.388±0.19 0.377±0.05 0.374±0.13 0.200±0.12 0.278±0.07 1.017±0.86 0.463±0.14 0.214±0.08 0.719±0.35 1.057±0.55 1.584±0.43
ENSMUST00000122816 0.242±0.05 N/A N/A 1.012±0.00 0.581±0.17 0.074±0.00 0.296±0.00 0.355±0.13 1.271±1.09 N/A 0.190±0.08 0.688±0.34 0.859±0.36 N/A
ENSMUST00000133830 0.395±0.00 0.371±0.10 N/A 1.001±0.00 0.728±0.21 0.440±0.00 0.107±0.01 0.334±0.09 0.156±0.02 0.477±0.13 0.137±0.00 0.598±0.26 N/A N/A
ENSMUST00000147282 N/A 0.338±0.15 N/A N/A 0.327±0.09 0.267±0.15 0.150±0.00 0.198±0.00 0.470±0.41 N/A 0.116±0.00 0.454±0.23 0.505±0.16 2.738±0.99

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