C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trefoil factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024831 Tff1-001 ENSMUSG00000024032 10090 - 17:31161396-31165053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLungOvaryPlacentaTestisENSMUST00000024831
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Lung Ovary Placenta Testis
ENSMUST00000024831 0.088±0.00 3.470±2.80 0.027±0.00 0.045±0.00 0.182±0.06 0.449±0.00 0.211±0.00 1.691±0.99 0.534±0.12 0.155±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QJ CIL_0008QJ_0002 VISTA 17:31053737-31653776
CIL_00036E CIL_00036E_0002 CGP 17:31141049-31165053
CIL_00036F CIL_00036F_0002 CGP 17:31161396-31198975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 TAS cytoplasm
GO:0008083 IEA growth factor activity
GO:0008285 IMP negative regulation of cell proliferation
GO:0009611 TAS response to wounding
GO:0010039 IEA response to iron ion
GO:0030154 IMP cell differentiation
GO:0030277 IEA maintenance of gastrointestinal epithelium
GO:0032355 IEA response to estradiol
GO:0035902 IEA response to immobilization stress
GO:0043434 IEA response to peptide hormone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296702 TCERG1-001 protein_coding Homo_sapiens 0.0000006 58
ENST00000394421 TCERG1-007 protein_coding Homo_sapiens 0.0000006 58
ENST00000507175 TCERG1-012 retained_intron Homo_sapiens 0.0000006 58
ENST00000549332 TCERG1-016 nonsense_mediated_decay Homo_sapiens 0.0000006 58

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